PH01005771G0040's details annotation
1.Annotation
ICBR annotation: methyltransferase, putative, expressed
Blast result AT5G64030 : 0
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01005771
Strand: +
| Region | Start | End |
| gene | 12924 | 19561 |
| mRNA | 12924 | 19561 |
| exon | 12924 | 14822 |
| exon | 14909 | 15058 |
| exon | 15480 | 15750 |
| exon | 15837 | 15947 |
| exon | 16114 | 16288 |
| exon | 16387 | 16659 |
| exon | 16870 | 17064 |
| exon | 17370 | 17496 |
| exon | 17893 | 18014 |
| exon | 19113 | 19561 |
| CDS | 13977 | 14822 |
| CDS | 14909 | 15058 |
| CDS | 15480 | 15750 |
| CDS | 15837 | 15947 |
| CDS | 16114 | 16288 |
| CDS | 16387 | 16659 |
| CDS | 16870 | 17064 |
| CDS | 17370 | 17496 |
| CDS | 17893 | 18014 |
| CDS | 19113 | 19233 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000569 | CMGC_Pl-Tthe (from iTAK) 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, membrane, Regulation_of_autophagy |
| coexpression network | CFinderM000919 | mRNA_cleavage_factor_complex mRNA_polyadenylation phytochelatin biosynthetic process, response to metal ion, nitrogen compound metabolic process, Styrene_degradation Regulation_of_autophagy Aminobenzoate_degradation Tryptophan_metabolism Cyanoamino_acid_metabolism glutathione gamma-glutamylcysteinyltransferase activity, mRNA_binding Nitrogen_metabolism C3H Transcription_Regulator(from PlantTFDB) GNAT Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001217 | Regulation_of_autophagy |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03141.15 | Methyltransf_29 | 228 | 719 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.