PH01005933G0010's details annotation
1.Annotation
ICBR annotation: 39S ribosomal protein L46, mitochondrial precursor, putative, expressed
Blast result AT1G14620 : 6.20E-61
Blast annotation: decoy
2.Location
Scaffold: PH01005933
Strand: +
| Region | Start | End |
| gene | 79 | 9772 |
| mRNA | 79 | 9772 |
| exon | 79 | 278 |
| exon | 382 | 447 |
| exon | 1353 | 1427 |
| exon | 4079 | 4208 |
| exon | 4388 | 4510 |
| exon | 5387 | 5509 |
| exon | 5539 | 5797 |
| exon | 6616 | 6700 |
| exon | 7168 | 7360 |
| exon | 8231 | 8337 |
| exon | 8469 | 8572 |
| exon | 9008 | 9248 |
| exon | 9342 | 9772 |
| CDS | 79 | 278 |
| CDS | 382 | 447 |
| CDS | 1353 | 1427 |
| CDS | 4079 | 4208 |
| CDS | 4388 | 4510 |
| CDS | 5387 | 5509 |
| CDS | 5539 | 5797 |
| CDS | 6616 | 6700 |
| CDS | 7168 | 7360 |
| CDS | 8231 | 8337 |
| CDS | 8469 | 8572 |
| CDS | 9008 | 9248 |
| CDS | 9342 | 9573 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001109 | RLK-Pelle_LRR-VI-2 (from iTAK) regulation of Rab GTPase activity, Spliceosome |
| coexpression network | CFinderM001171 | COPII_vesicle_coating |
| coexpression network | CFinderM001805 | Golgi vesicle transport, vesicle-mediated transport, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.