PH01006110G0040's details annotation
1.Annotation
ICBR annotation: argininosuccinate synthase, chloroplast precursor, putative, expressed
Blast result AT4G24830 : 0.00E+00
Blast annotation: arginosuccinate synthase family
2.Location
Scaffold: PH01006110
Strand: +
| Region | Start | End |
| gene | 17630 | 23906 |
| mRNA | 17630 | 23906 |
| exon | 17630 | 17892 |
| exon | 17997 | 18045 |
| exon | 18487 | 18669 |
| exon | 19400 | 19511 |
| exon | 20231 | 20274 |
| exon | 20396 | 20470 |
| exon | 20535 | 20720 |
| exon | 20960 | 21048 |
| exon | 21847 | 23906 |
| CDS | 17744 | 17892 |
| CDS | 17997 | 18045 |
| CDS | 18487 | 18669 |
| CDS | 19400 | 19511 |
| CDS | 20231 | 20274 |
| CDS | 20396 | 20470 |
| CDS | 20535 | 20720 |
| CDS | 20960 | 21048 |
| CDS | 21847 | 22498 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000900 | phosphopyruvate hydratase complex, glycolysis, phosphopyruvate hydratase activity, Alanine,_aspartate_and_glutamate_metabolism TKL-Pl-6 (from iTAK) magnesium ion binding, argininosuccinate synthase activity, 6-phosphofructokinase complex, arginine biosynthetic process, |
| coexpression network | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism TAZ Transcription_Regulator(from iTAK) Group-Pl-3 (from iTAK) CMGC_CLK (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) arginine biosynthetic process, 'de novo' IMP biosynthetic process, eukaryotic translation elongation factor 1 complex, argininosuccinate synthase activity, phosphoribosylformylglycinamidine cyclo-ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00764.18 | Arginosuc_synth | 33 | 128 |
| PF00764.18 | Arginosuc_synth | 180 | 297 |
| PF00764.18 | Arginosuc_synth | 326 | 504 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 268 Alanine, aspartate and glutamate metabolism | argininosuccinate synthase [EC:6.3.4.5] | K01940 | |
| Arginine and proline metabolism | argininosuccinate synthase [EC:6.3.4.5] | ko00330 | K01940 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004055 | argininosuccinate synthase activity |
| GO:0005524 | ATP binding |
| GO:0006526 | arginine biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.