PH01010620G0010's details annotation
1.Annotation
ICBR annotation: leaf senescence related protein, putative, expressed
Blast result AT5G51640 : 4.80E-48
Blast annotation: Plant protein of unknown function (DUF828)
2.Location
Scaffold: PH01010620
Strand: -
| Region | Start | End |
| gene | 154 | 2122 |
| mRNA | 154 | 2122 |
| exon | 154 | 724 |
| exon | 887 | 2122 |
| CDS | 399 | 724 |
| CDS | 887 | 1355 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000439 | polygalacturonase activity, nucleosome assembly, |
| coexpression network | CFinderM001583 | endoplasmic reticulum, bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14416.5 | PMR5N | 158 | 209 |
| PF13839.5 | PC-Esterase | 211 | 251 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.