CFinderADM000548 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| microtubule | 0.008261571 | GO:0005874 |
| Transcription factor: faR1 | 0.041192991 | gene family |
| tRNA dihydrouridine synthase activity | 0.042284553 | GO:0017150 |
| Transcription regulator: C3H | 0.044569404 | gene family |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g087370.2 | PHD finger family protein | AT3G08020 (2.00E-31) |
| Solyc01g087380.2 | RING/FYVE/PHD-type zinc finger family protein | AT3G08020 (5.00E-27) |
| Solyc02g089360.2 | SMAD/FHA domain-containing protein | AT5G38840 (2.00E-168) |
| Solyc04g057990.2 | Zinc finger C-x8-C-x5-C-x3-H type family protein | AT1G21580 (3.00E-142) |
| Solyc04g081490.2 | tubulin beta-1 chain | AT1G75780 (0) |
| Solyc06g066460.2 | ||
| Solyc08g060840.1 | FRS (FAR1 Related Sequences) transcription factor family | AT4G15090 (0) |
| Solyc12g021290.1 | Transducin/WD40 repeat-like superfamily protein | |
| Solyc12g098700.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT1G20920 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000332 | microtubule endoplasmic reticulum membrane microtubule-based process SOCS/VHL/BC-box: 3_box Transcription factor: Alfin-like Transcription regulator: TRAF E3 adaptor: BTB GTPase activity histone_binding Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000339 | glycolipid transport glycolipid binding glycolipid transporter activity microtubule-based process DUB: USP protein domain specific binding microtubule GTPase activity cytoplasm Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000395 | microtubule-based process microtubule GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000397 | microtubule microtubule-based process GTPase activity PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Transcription factor: bHLH Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000463 | integrator_complex retromer complex snRNA_processing Transcription factor: faR1 retrograde transport, endosome to Golgi metabolic process protein transport pyrimidine ribonucleosides salvage I lysine degradation II | details |
| CFinderADM000464 | integrator_complex transcription factor TFIIIB complex retromer complex protein_sumoylation cellular response to extracellular stimulus snRNA_processing transcription initiation from RNA polymerase III promoter retrograde transport, endosome to Golgi RNA polyadenylation lysine degradation II MicroRNAs_in_cancer | details |
| CFinderADM000485 | TFIIK_complex phosphatidylinositol-mediated signaling transcription, DNA-dependent microtubule regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity phosphatidylinositol phosphorylation microtubule-based process arginine degradation I (arginase pathway) arginine degradation VI (arginase 2 pathway) proline biosynthesis III L-Nδ-acetylornithine biosynthesis | details |
| CFinderADM000494 | retromer complex retrograde transport, endosome to Golgi microtubule protein transport microtubule-based process Transcription regulator: C3H Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000566 | microtubule Transcription factor: G2-like Transcription factor: bZIP microtubule-based process steroid biosynthetic process L-ascorbate biosynthesis V superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis UDP-sugars interconversion UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Nicotinate_and_nicotinamide_metabolism Amino_sugar_and_nucleotide_sugar_metabolism | details |
| CFinderADM000605 | microtubule-based process microtubule protein domain specific binding GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000623 | microtubule microtubule-based process GTPase activity coenzyme A biosynthetic process fatty acid beta-oxidation pantothenate kinase activity acyl-CoA oxidase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) phosphopantothenate biosynthesis I mevalonate pathway I lysine degradation II methyl ketone biosynthesis Peroxisome Two-component_system PPAR_signaling_pathway Nicotinate_and_nicotinamide_metabolism Biotin_metabolism | details |
| CFinderADM000624 | microtubule microtubule-based process protein domain specific binding anthocyanidin modification (Arabidopsis) Anthocyanin_biosynthesis Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000628 | microtubule-based process microtubule GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000639 | PPC:4.2.1: Calcium Dependent Protein Kinase microtubule microtubule-based process calmodulin binding GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000642 | nucleic acid binding DUB: USP microtubule-based process translational initiation RNA_transport | details |
| CFinderADM000884 | microtubule microtubule-based process GTPase activity protein glycosylation galactosyltransferase activity phospholipid remodeling (phosphatidylcholine, yeast) thioredoxin pathway phosphatidylcholine acyl editing Ether_lipid_metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000919 | microtubule microtubule-based process GTPase activity jasmonic_acid_metabolic_process induced_systemic_resistance,_jasmonic_acid_mediated_signaling_pathway jasmonate-amino_synthetase_activity response to wounding kinesin complex microtubule-based movement jasmonoyl-amino acid conjugates biosynthesis II jasmonoyl-amino acid conjugates biosynthesis I Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001025 | Transcription factor: faR1 lysine degradation II Herpes_simplex_infection MicroRNAs_in_cancer beta-Alanine_metabolism | details |
| CFinderADM001068 | SAGA complex microtubule four-way junction helicase activity protein binding transcription cofactor activity DNA recombination microtubule-based process GTPase activity Taste_transduction Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001146 | microtubule-based process microtubule GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001204 | microtubule-based process microtubule GTPase activity RNA methyltransferase activity endoplasmic reticulum membrane RNA processing Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001208 | microtubule microtubule-based process DUB: USP Transcription regulator: C3H Transcription factor: C2H2 Nicotinate_and_nicotinamide_metabolism | details |
Expression profiles
 Show details about module gene expression profiling |