CFinderADM000658 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| large ribosomal subunit | 0.005433683 | GO:0015934 |
| proteasome core complex | 0.005433683 | GO:0005839 |
| proteolysis involved in cellular protein catabolic process | 0.009961752 | GO:0051603 |
| nucleoside metabolic process | 0.009961752 | GO:0009116 |
| threonine-type endopeptidase activity | 0.019923505 | GO:0004298 |
| PRPP biosynthesis I | 0.001381275 | plantCyc |
| Purine_metabolism | 0.013167626 | KEGG |
| Proteasome | 0.013167626 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g084920.2 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | AT3G60820 (4.00E-116) |
| Solyc02g086840.2 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT3G27960 (0) |
| Solyc04g005590.2 | Ribosomal L32p protein family | AT1G26740 (6.00E-30) |
| Solyc04g014390.2 | mitochondrial ribosomal protein L51/S25/CI-B8 family protein | AT3G59650 (1.00E-55) |
| Solyc06g073700.2 | Small nuclear ribonucleoprotein family protein | AT1G65700 (7.00E-44) |
| Solyc10g007760.2 | Phosphoribosyltransferase family protein | AT2G42910 (9.00E-165) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000509 | E3 adaptor: DWD DUB: JAMM Transcription factor: Alfin-like mediator complex protein binding N-terminal protein amino acid methylation nucleoside metabolic process RNA_polymerase_II_transcription_cofactor_activity histone_binding regulation of transcription from RNA polymerase II promoter DNA-directed RNA polymerase activity PRPP biosynthesis I Purine_metabolism Proteasome | details |
| CFinderADM000576 | respiratory electron transport chain mitochondrial inner membrane oxidoreductase activity, acting on NADH or NADPH endocytosis ER to Golgi vesicle-mediated transport cis-Golgi network aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation aerobic respiration I (cytochrome c) Non-alcoholic_fatty_liver_disease_(NAFLD) | details |
| CFinderADM000684 | ATP-dependent peptidase activity Rho guanyl-nucleotide exchange factor activity ornithine biosynthesis Arginine_biosynthesis | details |
| CFinderADM000720 | Transcription factor: TCP | details |
| CFinderADM000789 | protein_prenylation protein prenyltransferase activity Terpenoid_backbone_biosynthesis | details |
| CFinderADM000835 | PPC:4.1.1: MAP3K triglyceride_biosynthetic_process actin_filament_depolymerization proteasome core complex actin cytoskeleton proteolysis involved in cellular protein catabolic process threonine-type endopeptidase activity diacylglycerol_O-acyltransferase_activity actin binding O-acyltransferase_activity protein domain specific binding triacylglycerol biosynthesis Fat_digestion_and_absorption Lysosome Proteasome | details |
| CFinderADM000836 | PPC:4.1.1: MAP3K PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) proteolysis involved in cellular protein catabolic process actin cytoskeleton proteasome core complex actin_filament_depolymerization threonine-type endopeptidase activity actin binding fatty acid β-oxidation II (peroxisome) unsaturated, even numbered fatty acid β-oxidation methyl ketone biosynthesis very long chain fatty acid biosynthesis II Proteasome PPAR_signaling_pathway | details |
| CFinderADM000878 | transcription, DNA-dependent spliceosomal complex nuclear mRNA splicing, via spliceosome | details |
| CFinderADM000890 | DUB: JAMM phosphotransferase activity, for other substituted phosphate groups ATPase activity proteasome core complex proteolysis involved in cellular protein catabolic process phospholipid biosynthetic process DNA recombination threonine-type endopeptidase activity four-way junction helicase activity membrane phosphatidylglycerol biosynthesis I (plastidic) cardiolipin biosynthesis II phosphatidylglycerol biosynthesis II (non-plastidic) Proteasome Glycerophospholipid_metabolism | details |
| CFinderADM000991 | racemase and epimerase activity, acting on carbohydrates and derivatives galactosyltransferase activity protein glycosylation Pentose_phosphate_pathway Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin Carbon_fixation_in_photosynthetic_organisms formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001067 | transcription, DNA-dependent protein_peptidyl-prolyl_isomerization | details |
| CFinderADM001094 | translational termination purine nucleotide biosynthetic process adenylosuccinate synthase activity protein domain specific binding translation release factor activity, codon specific cytoplasm Retrograde_endocannabinoid_signaling Alanine,_aspartate_and_glutamate_metabolism | details |
| CFinderADM001115 | protein glycosylation galactosyltransferase activity Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001184 | cellular amino acid metabolic process homoserine biosynthesis flavonol biosynthesis syringetin biosynthesis Monobactam_biosynthesis Flavonoid_biosynthesis Flavonoid_biosynthesis | details |
| CFinderADM001243 | tetrahydrofolate_biosynthetic_process PPC:4.5.3: Casein Kinase II Family GTP_cyclohydrolase_I_activity protein glycosylation galactosyltransferase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I tetrahydrofolate biosynthesis II syringetin biosynthesis flavonol biosynthesis Folate_biosynthesis Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin Flavonoid_biosynthesis Flavonoid_biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001266 | ATP-dependent peptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |