CFinderADM000792 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| ribosomal_large_subunit_biogenesis | 0.001266606 | GO:0042273 |
| ribosomal_large_subunit_export_from_nucleus | 0.001266606 | GO:0000055 |
| actin cytoskeleton organization | 0.001688468 | GO:0030036 |
| RNA binding | 0.008659681 | GO:0003723 |
| GTP binding | 0.008659681 | GO:0005525 |
| Herpes_simplex_infection | 0.026183969 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g065580.2 | pumilio 24 | AT3G16810 (0) |
| Solyc02g081660.2 | GTP-binding family protein | AT1G30960 (4.00E-128) |
| Solyc02g081680.2 | Noc2p family | AT2G18220 (0) |
| Solyc04g081030.2 | AT3G49990 (3.00E-80) | |
| Solyc04g081580.2 | DEA(D/H)-box RNA helicase family protein | AT4G16630 (0) |
| Solyc09g061430.2 | GTP-binding family protein | AT3G07050 (0) |
| Solyc10g080180.1 | Transducin/WD40 repeat-like superfamily protein | AT5G14050 (0) |
| Solyc12g099890.1 | ARM repeat superfamily protein | AT1G13160 (7.00E-176) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000198 | regulation of mRNA splicing, via spliceosome peroxisome organization integral_component_of_peroxisomal_membrane nuclease activity Base_excision_repair | details |
| CFinderADM000447 | RNA binding eukaryotic translation initiation factor 2 complex seryl-tRNA aminoacylation tRNA charging | details |
| CFinderADM000531 | ribosomal_large_subunit_biogenesis ribosomal_large_subunit_export_from_nucleus actin cytoskeleton organization E3 adaptor: DWD | details |
| CFinderADM000661 | ribosome biogenesis nucleus protein methylation pseudouridine synthesis | details |
| CFinderADM000822 | RNA modification pseudouridine synthesis RNA binding exonuclease activity pseudouridine synthase activity | details |
| CFinderADM001043 | seryl-tRNA aminoacylation tRNA aminoacylation for protein translation serine-tRNA ligase activity cytoplasm E3 adaptor: DWD tRNA charging Herpes_simplex_infection Aminoacyl-tRNA_biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |