CFinderADM000198 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| regulation of mRNA splicing, via spliceosome | 0.004797336 | GO:0048024 |
| peroxisome organization | 0.007192277 | GO:0007031 |
| integral_component_of_peroxisomal_membrane | 0.008626261 | GO:0005779 |
| nuclease activity | 0.026860817 | GO:0004518 |
| Base_excision_repair | 0.010316721 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc03g111600.2 | DNAse I-like superfamily protein | AT3G48425 (4.00E-158) |
| Solyc03g112520.2 | FKBP12 interacting protein 37 | AT3G54170 (1.00E-99) |
| Solyc04g064560.2 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | AT5G25800 (0) |
| Solyc06g073120.2 | AT1G12650 (9.00E-53) | |
| Solyc07g025390.2 | AT4G33380 (1.00E-80) | |
| Solyc07g040910.2 | Homeodomain-like/winged-helix DNA-binding family protein | |
| Solyc09g083270.2 | Protein of unknown function (DUF2361) | AT5G43720 (9.00E-54) |
| Solyc10g080180.1 | Transducin/WD40 repeat-like superfamily protein | AT5G14050 (0) |
| Solyc11g007810.1 | RNA polymerase II, Rpb4, core protein | AT5G62950 (6.00E-29) |
| Solyc12g040500.1 | peroxin 3 | AT1G48635 (3.00E-70) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000280 | regulation of mRNA splicing, via spliceosome peroxisome organization integral_component_of_peroxisomal_membrane nucleus nucleosome assembly nucleosome nuclease activity Transcription factor: MYB-RELATED Transcription factor: C2H2 Base_excision_repair | details |
| CFinderADM000447 | RNA binding eukaryotic translation initiation factor 2 complex seryl-tRNA aminoacylation tRNA charging | details |
| CFinderADM000673 | regulation of mRNA splicing, via spliceosome nuclease activity Transcription regulator: C3H Transcription factor: B3 DNA repair Base_excision_repair | details |
| CFinderADM000792 | ribosomal_large_subunit_biogenesis ribosomal_large_subunit_export_from_nucleus actin cytoskeleton organization RNA binding GTP binding Herpes_simplex_infection | details |
| CFinderADM000811 | regulation of mRNA splicing, via spliceosome translational initiation nuclease activity translation initiation factor activity DNA-directed RNA polymerase activity Base_excision_repair | details |
| CFinderADM001014 | regulation of mRNA splicing, via spliceosome | details |
| CFinderADM001164 | regulation of mRNA splicing, via spliceosome chromosome organization histone modification chromosome Cdc73/Paf1 complex Transcription regulator: C3H | details |
Expression profiles
 Show details about module gene expression profiling |