CFinderADM001133 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | 0.006346054 | GO:0016701 |
| 4-hydroxyphenylpyruvate dioxygenase activity | 0.006346054 | GO:0003868 |
| microtubule | 0.009175169 | GO:0005874 |
| aromatic amino acid family metabolic process | 0.016424493 | GO:0009072 |
| microtubule-based process | 0.047483211 | GO:0007017 |
| vitamin E biosynthesis (tocotrienols) | 0.012769719 | plantCyc |
| plastoquinol-9 biosynthesis I | 0.012769719 | plantCyc |
| phenylalanine biosynthesis (cytosolic, plants) | 0.012769719 | plantCyc |
| thioredoxin pathway | 0.025649146 | plantCyc |
| Bile_secretion | 0.01739404 | KEGG |
| Selenocompound_metabolism | 0.02986587 | KEGG |
| Ubiquinone_and_other_terpenoid-quinone_biosynthesis | 0.02986587 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc03g114730.2 | O-fucosyltransferase family protein | AT5G15740 (0) |
| Solyc04g078640.1 | DREB and EAR motif protein 2 | AT5G67190 (5.00E-40) |
| Solyc05g041200.2 | phytoene desaturation 1 | AT1G06570 (2.00E-175) |
| Solyc06g064640.2 | alpha/beta-Hydrolases superfamily protein | AT4G10030 (4.00E-135) |
| Solyc07g008820.2 | TRICHOME BIREFRINGENCE-LIKE 16 | AT5G20680 (8.00E-148) |
| Solyc07g053550.1 | Thioredoxin superfamily protein | AT1G28480 (6.00E-27) |
| Solyc07g055660.2 | glycine-rich protein | |
| Solyc07g064440.2 | AT4G27020 (0) | |
| Solyc08g006890.2 | Tubulin/FtsZ family protein | AT4G14960 (0) |
| Solyc10g080670.1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000272 | autophagy protein binding E3: RING protein ubiquitination Bile_secretion | details |
| CFinderADM000363 | microtubule microtubule-based process GTPase activity fatty acid beta-oxidation acyl-CoA oxidase activity hydrolase activity, hydrolyzing O-glycosyl compounds acyl-CoA dehydrogenase activity carbohydrate metabolic process oxidoreductase activity, acting on the CH-CH group of donors fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) methyl ketone biosynthesis Peroxisome PPAR_signaling_pathway Drug_metabolism_-_other_enzymes Lysosome hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000364 | microtubule microtubule-based process GTPase activity Lysosome Drug_metabolism_-_other_enzymes hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000395 | microtubule-based process microtubule GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000397 | microtubule microtubule-based process GTPase activity PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Transcription factor: bHLH Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000405 | Transcription factor: B3 protein binding DNA binding Transcription regulator: SET MicroRNAs_in_cancer | details |
| CFinderADM000422 | microtubule microtubule-based process GTPase activity 4-hydroxyphenylpyruvate dioxygenase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen aromatic amino acid family metabolic process vitamin E biosynthesis (tocotrienols) plastoquinol-9 biosynthesis I phenylalanine biosynthesis (cytosolic, plants) Other_types_of_O-glycan_biosynthesis Isoquinoline_alkaloid_biosynthesis Ubiquinone_and_other_terpenoid-quinone_biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000474 | glucose metabolic process protein dephosphorylation intracellular protein transport heme biosynthetic process glucose-6-phosphate dehydrogenase activity protein serine/threonine phosphatase activity ferrochelatase activity PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) pentose phosphate pathway (oxidative branch) I heme biosynthesis I (aerobic) glycerophosphodiester degradation | details |
| CFinderADM000501 | Transcription factor: NAC regulation of transcription, DNA-dependent DNA binding protein phosphorylation protein kinase activity PPC:1.6.4: RKF3 Like Kinase PPC:2.1.3: CTR1/EDR1 Kinase Transcription factor: CAMTA phosphate acquisition Endocrine_resistance | details |
| CFinderADM000521 | microtubule microtubule-based process | details |
| CFinderADM000600 | E3 adaptor: F-box fatty acid metabolic process phosphogluconate dehydrogenase (decarboxylating) activity 3-hydroxyacyl-CoA_dehydrogenase_activity endoplasmic reticulum membrane pyridine nucleotide cycling (plants) Benzoate_degradation Bile_secretion | details |
| CFinderADM000621 | Cytochrome P450: CYP714E DUB: OTU protein kinase C-activating G-protein coupled receptor signaling pathway intracellular_signal_transduction phosphatidate metabolism, as a signaling molecule gibberellin inactivation III (epoxidation) lysine degradation II choline biosynthesis III Choline_metabolism_in_cancer Lysine_degradation | details |
| CFinderADM000623 | microtubule microtubule-based process GTPase activity coenzyme A biosynthetic process fatty acid beta-oxidation pantothenate kinase activity acyl-CoA oxidase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) phosphopantothenate biosynthesis I mevalonate pathway I lysine degradation II methyl ketone biosynthesis Peroxisome Two-component_system PPAR_signaling_pathway Nicotinate_and_nicotinamide_metabolism Biotin_metabolism | details |
| CFinderADM000627 | microtubule-based process microtubule GTPase activity Drug_metabolism_-_other_enzymes | details |
| CFinderADM000702 | mitochondrial_fission E3: RING 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Bile_secretion | details |
| CFinderADM000723 | PPC:1.11.1: Legume Lectin Domain Kinase protein kinase C-activating G-protein coupled receptor signaling pathway cellular amino acid metabolic process diacylglycerol kinase activity phenylalanine biosynthesis (cytosolic, plants) phosphatidate metabolism, as a signaling molecule Bile_secretion | details |
| CFinderADM000767 | thymidine kinase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 4-hydroxyphenylpyruvate dioxygenase activity aromatic amino acid family metabolic process protein transport E3 adaptor: F-box plastoquinol-9 biosynthesis I phenylalanine biosynthesis (cytosolic, plants) vitamin E biosynthesis (tocotrienols) pyrimidine deoxyribonucleosides salvage Drug_metabolism_-_other_enzymes Ubiquinone_and_other_terpenoid-quinone_biosynthesis | details |
| CFinderADM000772 | ferrochelatase activity heme biosynthetic process PPC:4.2.1: Calcium Dependent Protein Kinase E3 adaptor: Cullin ubiquitin protein ligase binding protein kinase activity heme biosynthesis I (aerobic) phosphatidylcholine acyl editing phospholipases Bile_secretion | details |
| CFinderADM000773 | PPC:4.2.1: Calcium Dependent Protein Kinase phosphatidylcholine acyl editing phospholipases Bile_secretion Regulation_of_lipolysis_in_adipocyte | details |
| CFinderADM000800 | response to stress response to water transferase activity, transferring hexosyl groups soybean saponin I biosynthesis Chemical_carcinogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000832 | Transcription regulator: Orphans exocyst acyl-CoA dehydrogenase activity two-component sensor activity oxidoreductase activity, acting on the CH-CH group of donors ion channel activity Parkinson's_disease Bile_secretion Alzheimer's_disease Cationic_antimicrobial_peptide_(CAMP)_resistance | details |
| CFinderADM000860 | exocyst ion transport exocytosis ion channel activity Bile_secretion hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000864 | exocyst PPC:2.1.3: CTR1/EDR1 Kinase nucleoside_diphosphate_phosphorylation CTP biosynthetic process GTP biosynthetic process UTP biosynthetic process CMP phosphorylation purine deoxyribonucleosides salvage pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II guanosine ribonucleotides de novo biosynthesis UTP and CTP de novo biosynthesis guanosine deoxyribonucleotides de novo biosynthesis I adenosine deoxyribonucleotides de novo biosynthesis | details |
| CFinderADM000884 | microtubule microtubule-based process GTPase activity protein glycosylation galactosyltransferase activity phospholipid remodeling (phosphatidylcholine, yeast) thioredoxin pathway phosphatidylcholine acyl editing Ether_lipid_metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000887 | E3: RING Transcription factor: C2H2 Bile_secretion | details |
| CFinderADM000919 | microtubule microtubule-based process GTPase activity jasmonic_acid_metabolic_process induced_systemic_resistance,_jasmonic_acid_mediated_signaling_pathway jasmonate-amino_synthetase_activity response to wounding kinesin complex microtubule-based movement jasmonoyl-amino acid conjugates biosynthesis II jasmonoyl-amino acid conjugates biosynthesis I Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000931 | cysteine biosynthetic process from serine serine O-acetyltransferase activity microtubule-based process protein glycosylation galactosyltransferase activity GTPase activity microtubule seleno-amino acid biosynthesis cysteine biosynthesis I Biofilm_formation_-_vibrio_cholerae Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000932 | autophagic vacuole assembly galactosyltransferase activity protein glycosylation Transcription factor: NAC Transcription factor: LOB Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000958 | L-phenylalanine catabolic process tyrosine metabolic process Transcription factor: CAMTA homogentisate 1,2-dioxygenase activity Styrene_degradation Bile_secretion Taste_transduction | details |
| CFinderADM000959 | nucleus Transcription factor: CAMTA Transcription factor: HSF phosphatidylinositol metabolic process lysine degradation II D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis Lysine_degradation Bile_secretion Choline_metabolism_in_cancer | details |
| CFinderADM001116 | steroid biosynthetic process oxidation-reduction process response to stress 3-beta-hydroxy-delta5-steroid dehydrogenase activity L-ascorbate biosynthesis V superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) UDP-sugars interconversion Drug_metabolism_-_cytochrome_P450 Amino_sugar_and_nucleotide_sugar_metabolism | details |
| CFinderADM001134 | microtubule-based process microtubule Transcription factor: C2H2 thioredoxin pathway Selenocompound_metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001143 | mitochondrial_fission folic acid binding PPC:5.2.1: Other Kinase transferase activity acid phosphatase activity folate transformations II phosphate acquisition Cell_cycle_-_yeast Bile_secretion One_carbon_pool_by_folate Tuberculosis | details |
| CFinderADM001144 | Transcription factor: EIL Transcription factor: PLATZ Bile_secretion | details |
| CFinderADM001145 | Transcription regulator: TRAF SOCS/VHL/BC-box: 3_box Transcription factor: PLATZ E3 adaptor: BTB Bile_secretion | details |
| CFinderADM001146 | microtubule-based process microtubule GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001150 | cellular amino acid metabolic process lyase activity phenylalanine biosynthesis (cytosolic, plants) Bile_secretion | details |
| CFinderADM001183 | potassium_ion_transmembrane_transport protein transport potassium ion transmembrane transporter activity transaminase activity proline biosynthesis III arginine degradation I (arginase pathway) arginine degradation VI (arginase 2 pathway) L-Nδ-acetylornithine biosynthesis Bile_secretion Arginine_and_proline_metabolism | details |
| CFinderADM001196 | vacuolar transport DUB: OTU Transcription factor: trihelix Bile_secretion | details |
| CFinderADM001198 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor deoxyribonucleoside diphosphate metabolic process DNA replication protein transport oxidation-reduction process E3 adaptor: F-box Herpes_simplex_infection | details |
| CFinderADM001204 | microtubule-based process microtubule GTPase activity RNA methyltransferase activity endoplasmic reticulum membrane RNA processing Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001251 | mitochondrial_fission cellular aromatic compound metabolic process ferrous iron binding intracellular protein transport Bile_secretion | details |
| CFinderADM001267 | Transcription factor: HSF phosphatidylinositol metabolic process phosphatidylinositol phosphate kinase activity lysine degradation II D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis Bile_secretion Lysine_degradation Choline_metabolism_in_cancer | details |
| CFinderADM001312 | microtubule-based process microtubule protein domain specific binding GTPase activity O-methyltransferase activity β-alanine betaine biosynthesis | details |
| CFinderADM001326 | transferase activity, transferring alkyl or aryl (other than methyl) groups Transcription factor: ERF chorismate biosynthesis from 3-dehydroquinate Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |