TissueCFM000240 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| tRNA (guanine-N7-)-methyltransferase activity | 0.00239891 | GO:0008176 |
| phosphoglycerate kinase activity | 0.00239891 | GO:0004618 |
| tRNA modification | 0.005540525 | GO:0006400 |
| glycolysis | 0.017376014 | GO:0006096 |
| lyase activity | 0.023514685 | GO:0016829 |
| sucrose biosynthesis I (from photosynthesis) | 0.023896356 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.023896356 | plantCyc |
| Calvin-Benson-Bassham cycle | 0.023896356 | plantCyc |
| glycolysis IV (plant cytosol) | 0.023896356 | plantCyc |
| gluconeogenesis I | 0.023896356 | plantCyc |
| Glyoxylate and dicarboxylate metabolism | 0.006041773 | KEGG |
| Carbon fixation in photosynthetic organisms | 0.012268904 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g068730.2 | TCP-1/cpn60 chaperonin family protein | AT5G18820 (0) |
| Solyc02g071570.2 | Pentatricopeptide repeat (PPR) superfamily protein | AT4G18975 (7.00E-86) |
| Solyc04g071280.1 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT3G61360 (4.00E-151) |
| Solyc09g008130.2 | phosphoglycerate kinase 1 | AT3G12780 (5.00E-46) |
| Solyc10g081280.1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000352 | proton-transporting V-type ATPase, V0 domain ATP hydrolysis coupled proton transport biosynthetic process threonine biosynthesis isoleucine biosynthesis I (from threonine) 4-hydroxyphenylpyruvate biosynthesis aspartate biosynthesis aspartate degradation I rosmarinic acid biosynthesis I aspartate degradation II 4-hydroxybenzoate biosynthesis I (eukaryotes) | details |
| TissueCFM001056 | cobalamin biosynthetic process sirohydrochlorin cobaltochelatase activity Cytochrome_P450, Cytochrome P450: CYP704A Transcription_related, Transcription regulator: HB siroheme biosynthesis Diterpenoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |