TissueCFM000352 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| proton-transporting V-type ATPase, V0 domain | 0.002329727 | GO:0033179 |
| ATP hydrolysis coupled proton transport | 0.032492521 | GO:0015991 |
| biosynthetic process | 0.046381458 | GO:0009058 |
| threonine biosynthesis | 0.010130986 | plantCyc |
| isoleucine biosynthesis I (from threonine) | 0.010130986 | plantCyc |
| 4-hydroxyphenylpyruvate biosynthesis | 0.010130986 | plantCyc |
| aspartate biosynthesis | 0.010130986 | plantCyc |
| aspartate degradation I | 0.010130986 | plantCyc |
| rosmarinic acid biosynthesis I | 0.011252764 | plantCyc |
| aspartate degradation II | 0.013656206 | plantCyc |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 0.024550333 | plantCyc |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g096080.2 | Protein of unknown function (DUF688) | |
| Solyc02g068730.2 | TCP-1/cpn60 chaperonin family protein | AT5G18820 (0) |
| Solyc02g071510.2 | DNA-binding bromodomain-containing protein | AT5G46550 (5.00E-34) |
| Solyc03g007070.2 | 1-amino-cyclopropane-1-carboxylate synthase 12 | AT5G51690 (8.00E-176) |
| Solyc03g031890.2 | oxidative stress 3 | |
| Solyc06g066430.2 | IQ-domain 26 | AT3G16490 (4.00E-64) |
| Solyc07g049710.2 | ATPase, V0 complex, subunit E | AT5G55290 (2.00E-30) |
| Solyc11g012910.1 | ChaC-like family protein | AT1G44790 (3.00E-76) |
| Solyc12g005040.1 | calcium-dependent protein kinase 33 | AT1G50700 (2.00E-42) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000240 | tRNA (guanine-N7-)-methyltransferase activity phosphoglycerate kinase activity tRNA modification glycolysis lyase activity sucrose biosynthesis I (from photosynthesis) glycolysis I (from glucose 6-phosphate) Calvin-Benson-Bassham cycle glycolysis IV (plant cytosol) gluconeogenesis I Glyoxylate and dicarboxylate metabolism Carbon fixation in photosynthetic organisms | details |
| TissueCFM000296 | proton-transporting V-type ATPase, V0 domain RNA processing ATP hydrolysis coupled proton transport | details |
| TissueCFM000391 | proton-transporting V-type ATPase, V0 domain alanyl-tRNA aminoacylation microtubule tRNA aminoacylation alanine-tRNA ligase activity microtubule-based process ligase activity, forming aminoacyl-tRNA and related compounds ATP hydrolysis coupled proton transport nucleic acid binding ATP binding helicase activity hydrogen ion transmembrane transporter activity GTPase activity tRNA charging | details |
| TissueCFM000486 | cell cycle arrest proton-transporting V-type ATPase, V0 domain cyclin-dependent protein kinase inhibitor activity ATP hydrolysis coupled proton transport nucleic acid binding hydrogen ion transmembrane transporter activity Transcription_related, Transcription regulator: C3H | details |
| TissueCFM000487 | proton-transporting V-type ATPase, V0 domain ATP hydrolysis coupled proton transport | details |
| TissueCFM000725 | proton-transporting V-type ATPase, V0 domain RNA processing ATP hydrolysis coupled proton transport ubiquitin-dependent protein catabolic process hydrogen ion transmembrane transporter activity Ubiquitin_Proteasome_system, E3 adaptor: SKP1 | details |
| TissueCFM001071 | proton-transporting V-type ATPase, V0 domain ATP hydrolysis coupled proton transport biosynthetic process Transcription_related, Transcription factor: bHLH threonine biosynthesis aspartate degradation I isoleucine biosynthesis I (from threonine) aspartate biosynthesis 4-hydroxyphenylpyruvate biosynthesis rosmarinic acid biosynthesis I aspartate degradation II 4-hydroxybenzoate biosynthesis I (eukaryotes) | details |
| TissueCFM001327 | pyruvate kinase activity potassium ion binding tRNA dihydrouridine synthase activity tRNA processing glycolysis flavin adenine dinucleotide binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Non-alcoholic fatty liver disease (NAFLD) | details |
Expression profiles
 Show details about module gene expression profiling |