TissueCFM000725 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| proton-transporting V-type ATPase, V0 domain | 0.001295038 | GO:0033179 |
| RNA processing | 0.021802633 | GO:0006396 |
| ATP hydrolysis coupled proton transport | 0.021802633 | GO:0015991 |
| ubiquitin-dependent protein catabolic process | 0.021802633 | GO:0006511 |
| hydrogen ion transmembrane transporter activity | 0.035539801 | GO:0015078 |
| Ubiquitin_Proteasome_system, E3 adaptor: SKP1 | 0.002876041 | gene family |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g071510.2 | DNA-binding bromodomain-containing protein | AT5G46550 (5.00E-34) |
| Solyc03g025420.2 | SKP1-like 21 | AT3G61415 (8.00E-97) |
| Solyc03g115580.2 | nucleotide repair protein, putative | AT3G05210 (1.00E-114) |
| Solyc07g049710.2 | ATPase, V0 complex, subunit E | AT5G55290 (2.00E-30) |
| Solyc10g006260.2 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | AT5G55100 (7.00E-45) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000296 | proton-transporting V-type ATPase, V0 domain RNA processing ATP hydrolysis coupled proton transport | details |
| TissueCFM000352 | proton-transporting V-type ATPase, V0 domain ATP hydrolysis coupled proton transport biosynthetic process threonine biosynthesis isoleucine biosynthesis I (from threonine) 4-hydroxyphenylpyruvate biosynthesis aspartate biosynthesis aspartate degradation I rosmarinic acid biosynthesis I aspartate degradation II 4-hydroxybenzoate biosynthesis I (eukaryotes) | details |
| TissueCFM000391 | proton-transporting V-type ATPase, V0 domain alanyl-tRNA aminoacylation microtubule tRNA aminoacylation alanine-tRNA ligase activity microtubule-based process ligase activity, forming aminoacyl-tRNA and related compounds ATP hydrolysis coupled proton transport nucleic acid binding ATP binding helicase activity hydrogen ion transmembrane transporter activity GTPase activity tRNA charging | details |
| TissueCFM000486 | cell cycle arrest proton-transporting V-type ATPase, V0 domain cyclin-dependent protein kinase inhibitor activity ATP hydrolysis coupled proton transport nucleic acid binding hydrogen ion transmembrane transporter activity Transcription_related, Transcription regulator: C3H | details |
| TissueCFM000487 | proton-transporting V-type ATPase, V0 domain ATP hydrolysis coupled proton transport | details |
| TissueCFM001071 | proton-transporting V-type ATPase, V0 domain ATP hydrolysis coupled proton transport biosynthetic process Transcription_related, Transcription factor: bHLH threonine biosynthesis aspartate degradation I isoleucine biosynthesis I (from threonine) aspartate biosynthesis 4-hydroxyphenylpyruvate biosynthesis rosmarinic acid biosynthesis I aspartate degradation II 4-hydroxybenzoate biosynthesis I (eukaryotes) | details |
| TissueCFM001333 | Ino80_complex RNA processing RNA binding formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |