TissueCFM000807 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| kinesin complex | 0.013027362 | GO:0005871 |
| tricarboxylic acid cycle | 0.016279766 | GO:0006099 |
| carbon fixation | 0.016279766 | GO:0015977 |
| phosphoenolpyruvate carboxylase activity | 0.030657223 | GO:0008964 |
| amino acid binding | 0.048113266 | GO:0016597 |
| Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase | 0.000805918 | gene family |
| allantoin degradation to ureidoglycolate I (urea producing) | 0.00335799 | plantCyc |
| allantoin degradation to ureidoglycolate II (ammonia producing) | 0.00335799 | plantCyc |
| CO2 fixation into oxaloacetate (anapleurotic) | 0.00391664 | plantCyc |
| glutamine biosynthesis III | 0.013817062 | plantCyc |
| Purine metabolism | 0.028427306 | KEGG |
| Two-component system | 0.018440258 | KEGG |
| Methane metabolism | 0.018440258 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g059860.2 | PAS domain-containing protein tyrosine kinase family protein | AT5G49470 (0) |
| Solyc02g078400.2 | allantoinase | AT4G04955 (0) |
| Solyc04g011580.2 | pumilio 1 | AT2G29200 (0) |
| Solyc06g059800.2 | ACT domain repeat 3 | AT1G76990 (0) |
| Solyc06g066030.2 | TPX2 (targeting protein for Xklp2) protein family | AT4G32330 (3.00E-54) |
| Solyc11g010560.1 | kinesin like protein for actin based chloroplast movement 1 | AT5G65460 (0) |
| Solyc12g014250.1 | phosphoenolpyruvate carboxylase 1 | AT1G53310 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000438 | IMP salvage protein phosphatase type 2A complex AMP deaminase activity deaminase activity ionotropic glutamate receptor activity protein phosphatase type 2A regulator activity galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity membrane Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase formation of glycosidic bonds, GlycosylTransferases: GTnc CDP-diacylglycerol biosynthesis II xylan biosynthesis CDP-diacylglycerol biosynthesis I adenosine nucleotides degradation I | details |
| TissueCFM000474 | response to metal ion phytochelatin biosynthetic process glutathione gamma-glutamylcysteinyltransferase activity mismatched DNA binding Transcription_related, Transcription regulator: SNF2 formation of glycosidic bonds, GlycosylTransferases: GTnc phytochelatins biosynthesis allantoin degradation to ureidoglycolate II (ammonia producing) allantoin degradation to ureidoglycolate I (urea producing) homophytochelatin biosynthesis xylogalacturonan biosynthesis Mismatch repair Purine metabolism | details |
| TissueCFM000801 | phosphoenolpyruvate carboxylase activity malate_dehydrogenase_(decarboxylating)_(NAD+)_activity carbon fixation tricarboxylic acid cycle solute:hydrogen antiporter activity NAD binding cation transport CO2 fixation into oxaloacetate (anapleurotic) TCA cycle variation V (plant) glutamine biosynthesis III gluconeogenesis I Carbon fixation in photosynthetic organisms Methane metabolism | details |
| TissueCFM000883 | details | |
| TissueCFM000955 | hydrolase activity kinesin complex Transcription_related, Transcription factor: MIKC Transcription_related, Transcription factor: C2H2 allantoin degradation to ureidoglycolate II (ammonia producing) allantoin degradation to ureidoglycolate I (urea producing) pyridine nucleotide cycling (plants) acetaldehyde biosynthesis I pyruvate fermentation to ethanol II Peroxisome Purine metabolism Oxytocin signaling pathway Chemical carcinogenesis | details |
| TissueCFM000970 | mannose metabolic process IMP salvage alpha-mannosidase activity deaminase activity mannosidase activity AMP deaminase activity mismatched DNA binding Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase adenosine nucleotides degradation I Mismatch repair Purine metabolism Lysosome hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TissueCFM001249 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase Transcription_related, Transcription factor: C2H2 allantoin degradation to ureidoglycolate I (urea producing) allantoin degradation to ureidoglycolate II (ammonia producing) Purine metabolism Two-component system beta-Lactam resistance | details |
| TissueCFM001366 | Transcription_related, Transcription factor: ERF thioredoxin pathway Selenocompound metabolism | details |
Expression profiles
 Show details about module gene expression profiling |