TissueCFM000983 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity | 0.004661467 | GO:0000079 |
| nucleic acid binding | 0.007179685 | GO:0003676 |
| protein_kinase_binding | 0.007179685 | GO:0019901 |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g057840.2 | zinc knuckle (CCHC-type) family protein | AT5G49930 (6.00E-151) |
| Solyc01g098230.2 | translocase inner membrane subunit 44-2 | AT2G20510 (3.00E-142) |
| Solyc01g109990.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | AT2G21440 (0) |
| Solyc04g011500.2 | actin-11 | AT3G12110 (0) |
| Solyc05g007740.1 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT2G25580 (1.00E-130) |
| Solyc10g078180.1 | Cyclin family protein | AT5G45190 (1.00E-147) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000052 | DNA-directed DNA polymerase activity transcription, DNA-dependent DNA binding | details |
| TissueCFM000288 | vacuole_organization pseudouridine synthase activity nucleobase-containing compound kinase activity RNA modification pseudouridine synthesis nucleobase-containing compound metabolic process intracellular protein transport adenosine ribonucleotides de novo biosynthesis Ribosome biogenesis in eukaryotes | details |
| TissueCFM000326 | Transcription_related, Transcription regulator: C3H | details |
| TissueCFM000335 | protein_farnesyltransferase_complex regulation_of_cell_proliferation protein_farnesylation protein_prenylation cellular metabolic process protein prenyltransferase activity Terpenoid backbone biosynthesis | details |
| TissueCFM000369 | cohesin core heterodimer mitotic sister chromatid cohesion chromosome organization chromosome mitochondrion chromatin binding double-stranded DNA binding Transcription_related, Transcription factor: mTERF | details |
| TissueCFM000434 | ATP-dependent_5'-3'_DNA_helicase_activity DNA helicase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD flavonol biosynthesis syringetin biosynthesis mRNA surveillance pathway Flavonoid biosynthesis Flavonoid biosynthesis | details |
| TissueCFM000449 | peptide_biosynthetic_process protein insertion into membrane ubiquitin protein ligase binding ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: Cullin Transcription_related, Transcription regulator: C3H | details |
| TissueCFM000509 | retromer complex microtubule Nicotinate and nicotinamide metabolism | details |
| TissueCFM000511 | ubiquitin ligase complex GPI-anchor transamidase complex F-actin capping protein complex ubiquitin-dependent protein catabolic process attachment_of_GPI_anchor_to_protein barbed-end_actin_filament_capping GPI-anchor_transamidase_activity ubiquitin-ubiquitin ligase activity exocyst Ubiquitin_Proteasome_system, E3 adaptor: Cullin Antigen processing and presentation | details |
| TissueCFM000601 | nuclear chromosome chromatin remodeling Homologous recombination | details |
| TissueCFM000732 | ubiquitin-dependent protein catabolic process proteasome_regulatory_particle,_base_subcomplex ubiquitin protein ligase binding Ubiquitin_Proteasome_system, E3 adaptor: Cullin | details |
| TissueCFM000802 | DNA recombination four-way junction helicase activity Synaptic vesicle cycle | details |
| TissueCFM000821 | protein arginylation actin cytoskeleton Arp2/3_protein_complex regulation of actin filament polymerization arginyltransferase activity Arp2/3_complex-mediated_actin_nucleation protein binding formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII dolichyl-diphosphooligosaccharide biosynthesis Various types of N-glycan biosynthesis | details |
| TissueCFM000846 | ubiquitin ligase complex retromer complex ubiquitin-ubiquitin ligase activity retrograde transport, endosome to Golgi protein transport | details |
| TissueCFM000859 | attachment_of_GPI_anchor_to_protein vacuole_organization phosphoric ester hydrolase activity GPI-anchor transamidase complex intracellular protein transport 3-phosphoinositide biosynthesis | details |
| TissueCFM000948 | RNA processing Proteasome | details |
| TissueCFM000975 | details | |
| TissueCFM000979 | RNA processing nucleobase-containing compound metabolic process nucleobase-containing compound kinase activity adenosine ribonucleotides de novo biosynthesis Ribosome biogenesis in eukaryotes | details |
| TissueCFM001011 | cellular metabolic process nucleotidyltransferase activity biosynthetic process | details |
| TissueCFM001094 | Golgi vesicle transport endoplasmic reticulum | details |
| TissueCFM001152 | tRNA processing ribonuclease activity Ubiquitin_Proteasome_system, E3 adaptor: DWD Ribosome biogenesis in eukaryotes Herpes simplex infection | details |
| TissueCFM001189 | proteasome_regulatory_particle,_base_subcomplex ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: HSF | details |
| TissueCFM001239 | vacuole_organization cytoplasm intracellular protein transport | details |
| TissueCFM001242 | F-actin capping protein complex barbed-end_actin_filament_capping transferase activity, transferring acyl groups 2-oxoglutarate decarboxylation to succinyl-CoA Lysine degradation | details |
| TissueCFM001268 | transcription_corepressor_activity GPI-anchor transamidase complex nucleus attachment_of_GPI_anchor_to_protein regulation of transcription, DNA-dependent transcription, DNA-dependent | details |
| TissueCFM001406 | glutaminyl-tRNA aminoacylation glutamine-tRNA ligase activity tRNA aminoacylation ligase activity, forming aminoacyl-tRNA and related compounds tRNA aminoacylation for protein translation cytoplasm N-acetyltransferase_activity aminoacyl-tRNA ligase activity nucleotide binding tRNA charging Aminoacyl-tRNA biosynthesis | details |
| TissueCFM001445 | protein_deubiquitination thiol-dependent ubiquitinyl hydrolase activity GTPase activity Ubiquitin_Proteasome_system, DUB: USP Epstein-Barr virus infection | details |
| TissueCFM001453 | vesicle docking involved in exocytosis vesicle-mediated transport | details |
| TissueCFM001458 | core TFIIH complex nucleotide-excision repair regulation of transcription, DNA-dependent transcription, DNA-dependent Transcription_related, Transcription factor: BSD Transcription_related, Transcription factor: faR1 | details |
| TissueCFM001471 | U6_snRNA_binding U5_snRNA_binding TORC1_complex TOR_signaling nuclear pore spliceosomal complex nuclear mRNA splicing, via spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |