TreatCFM000389 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| electron-transferring-flavoprotein dehydrogenase activity | 0.017587161 | GO:0004174 |
| magnesium_ion_transport | 0.02465159 | GO:0015693 |
| Cytochrome_P450, Cytochrome P450: CYP89A | 0.027579649 | gene family |
| valine degradation I | 0.022132856 | plantCyc |
| poly-hydroxy fatty acids biosynthesis | 0.022132856 | plantCyc |
| beta-Alanine metabolism | 0.046988845 | KEGG |
| MicroRNAs in cancer | 0.046988845 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g056620.2 | double-stranded-RNA-binding protein 4 | AT3G62800 (6.00E-36) |
| Solyc01g080930.2 | beta-hydroxyisobutyryl-CoA hydrolase 1 | AT5G65940 (2.00E-162) |
| Solyc02g094600.2 | ARM repeat superfamily protein | AT1G12930 (2.00E-47) |
| Solyc03g051950.2 | SET domain protein 38 | AT5G06620 (1.00E-44) |
| Solyc03g096990.2 | cytochrome P450, family 87, subfamily A, polypeptide 6 | AT1G64940 (2.00E-172) |
| Solyc04g009340.2 | RING/U-box superfamily protein | AT3G19895 (1.00E-171) |
| Solyc06g036300.2 | Homeodomain-like superfamily protein | AT5G52660 (7.00E-75) |
| Solyc11g007320.1 | Galactose oxidase/kelch repeat superfamily protein | AT2G36360 (2.00E-179) |
| Solyc11g016940.1 | Protein of unknown function (DUF803) | AT2G21120 (1.00E-96) |
| Solyc11g019930.1 | Protease-associated (PA) RING/U-box zinc finger family protein | AT1G71980 (3.00E-125) |
| Solyc12g017410.1 | floral homeotic protein (HUA1) | AT3G12680 (2.00E-150) |
| Solyc12g021170.1 | electron-transfer flavoprotein:ubiquinone oxidoreductase | AT2G43400 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000334 | magnesium_ion_transport small GTPase mediated signal transduction signal transducer activity magnesium_ion_transmembrane_transporter_activity Transcription_related, Transcription factor: STAT | details |
| TreatCFM000476 | microtubule-based process microtubule GTPase activity protein binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Nicotinate and nicotinamide metabolism | details |
| TreatCFM000583 | magnesium_ion_transport translational termination translation release factor activity, codon specific oxygen binding translation release factor activity magnesium_ion_transmembrane_transporter_activity | details |
| TreatCFM000891 | Ubiquitin_Proteasome_system, E3 adaptor: DWD Phenylalanine metabolism | details |
| TreatCFM001073 | mitochondrion_organization RNA modification pseudouridine synthesis ATP-dependent_5'-3'_DNA_helicase_activity methionine biosynthesis II Selenocompound metabolism Toluene degradation | details |
| TreatCFM001087 | small GTPase mediated signal transduction Transcription_related, Transcription regulator: C3H | details |
| TreatCFM001088 | phospholipid biosynthetic process phosphotransferase activity, for other substituted phosphate groups GTPase activator activity Transcription_related, Transcription regulator: C3H phosphatidylglycerol biosynthesis II (non-plastidic) cardiolipin biosynthesis II phosphatidylglycerol biosynthesis I (plastidic) Glycerophospholipid metabolism | details |
| TreatCFM001221 | inositol pentakisphosphate 2-kinase activity ATP-dependent 3'-5' DNA helicase activity Ubiquitin_Proteasome_system, E3: U-box inositol pyrophosphates biosynthesis 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3) | details |
| TreatCFM001369 | phospholipid biosynthetic process translational termination phosphotransferase activity, for other substituted phosphate groups translation release factor activity translation release factor activity, codon specific cardiolipin biosynthesis II phosphatidylglycerol biosynthesis II (non-plastidic) phosphatidylglycerol biosynthesis I (plastidic) valine biosynthesis Pantothenate and CoA biosynthesis Glycerophospholipid metabolism | details |
| TreatCFM001501 | electron-transferring-flavoprotein dehydrogenase activity peptidyl-prolyl cis-trans isomerase activity protein_peptidyl-prolyl_isomerization protein folding vesicle-mediated transport Cationic antimicrobial peptide (CAMP) resistance | details |
| TreatCFM001523 | ATP-dependent_5'-3'_DNA_helicase_activity DNA helicase activity ATP binding Herpes simplex infection Viral carcinogenesis | details |
| TreatCFM001611 | magnesium_ion_transport magnesium_ion_transmembrane_transporter_activity amino acid transmembrane transporter activity amino_acid_transmembrane_transport Cytochrome_P450, Cytochrome P450: CYP89A Transcription_related, Transcription regulator: C3H poly-hydroxy fatty acids biosynthesis | details |
| TreatCFM001612 | Cytochrome_P450, Cytochrome P450: CYP89A Ubiquitin_Proteasome_system, E3 adaptor: DWD poly-hydroxy fatty acids biosynthesis Hippo signaling pathway -fly | details |
Expression profiles
 Show details about module gene expression profiling |