TreatCFM000428 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| transport | 0.023570556 | GO:0006810 |
| 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 0.041939726 | GO:0003854 |
| isomerase activity | 0.041939726 | GO:0016853 |
| steroid biosynthetic process | 0.048468393 | GO:0006694 |
| UDP-L-rhamnose biosynthesis | 0.013141864 | plantCyc |
| trehalose degradation II (trehalase) | 0.015759117 | plantCyc |
| syringetin biosynthesis | 0.025346243 | plantCyc |
| flavonol biosynthesis | 0.026191216 | plantCyc |
| Terpenoid backbone biosynthesis | 0.028519521 | KEGG |
| Flavonoid biosynthesis | 0.028519521 | plantCyc |
| Galactose metabolism | 0.028519521 | KEGG |
| Flavonoid biosynthesis | 0.032405239 | plantCyc |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g110390.2 | LYR family of Fe/S cluster biogenesis protein | AT4G34700 (4.00E-49) |
| Solyc04g047690.2 | Got1/Sft2-like vescicle transport protein family | |
| Solyc05g054520.2 | Prenyltransferase family protein | AT2G39550 (5.00E-123) |
| Solyc07g062130.2 | rhamnose biosynthesis 1 | AT1G78570 (0) |
| Solyc08g069080.2 | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | AT3G23325 (1.00E-46) |
| Solyc09g074870.2 | Ubiquinol-cytochrome C reductase hinge protein | AT1G15120 (3.00E-27) |
| Solyc10g037960.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | AT5G48020 (8.00E-78) |
| Solyc11g044270.1 | Major facilitator superfamily protein | AT5G64500 (3.00E-54) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000384 | nickel cation binding nitrogen compound metabolic process steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GTPase activity UDP-L-rhamnose biosynthesis | details |
| TreatCFM000429 | isomerase activity trehalose degradation II (trehalase) Galactose metabolism | details |
| TreatCFM000683 | peroxiredoxin activity steroid biosynthetic process FAD binding oxidation-reduction process 3-beta-hydroxy-delta5-steroid dehydrogenase activity coenzyme binding Ubiquitin_Proteasome_system, E3 adaptor: DWD UDP-L-rhamnose biosynthesis Phenylpropanoid biosynthesis Apoptosis - fly | details |
| TreatCFM000693 | autophagic vacuole assembly 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor cytoplasm UDP-L-rhamnose biosynthesis | details |
| TreatCFM000694 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor steroid biosynthetic process UDP-L-rhamnose biosynthesis | details |
| TreatCFM000857 | protein tyrosine phosphatase activity Transcription_related, Transcription factor: NF-YA Transcription_related, Transcription factor: Alfin-like Ubiquitin_Proteasome_system, E3: RING Cytochrome_P450, Cytochrome P450: CYP76B UDP-L-rhamnose biosynthesis | details |
| TreatCFM000864 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor UDP-L-rhamnose biosynthesis | details |
| TreatCFM001071 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor steroid biosynthetic process UDP-L-rhamnose biosynthesis | details |
| TreatCFM001149 | mediator complex cyclin-dependent protein kinase regulator activity protein_kinase_binding regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor steroid biosynthetic process UDP-L-rhamnose biosynthesis | details |
| TreatCFM001177 | phosphatidylinositol phosphorylation 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor UDP-L-rhamnose biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation Glycine, serine and threonine metabolism Phosphatidylinositol signaling system | details |
| TreatCFM001223 | ER to Golgi vesicle-mediated transport cis-Golgi network | details |
| TreatCFM001245 | glycolipid transport glycolipid transporter activity prenyltransferase activity glycolipid binding steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor UDP-L-rhamnose biosynthesis EGFR tyrosine kinase inhibitor resistance | details |
| TreatCFM001260 | aromatic amino acid family biosynthetic process 3-deoxy-7-phosphoheptulonate synthase activity Transcription_related, Transcription factor: C2H2 3-dehydroquinate biosynthesis I Terpenoid backbone biosynthesis Quorum sensing | details |
| TreatCFM001295 | mediator complex cyclin-dependent protein kinase regulator activity protein_kinase_binding FAD binding regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity steroid biosynthetic process UDP-L-rhamnose biosynthesis pyridine nucleotide cycling (plants) | details |
| TreatCFM001302 | steroid biosynthetic process protein_peptidyl-prolyl_isomerization peptidyl-prolyl cis-trans isomerase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor UDP-L-rhamnose biosynthesis Cationic antimicrobial peptide (CAMP) resistance | details |
| TreatCFM001426 | steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor aspartic-type endopeptidase activity UDP-L-rhamnose biosynthesis syringetin biosynthesis flavonol biosynthesis Flavonoid biosynthesis Flavonoid biosynthesis | details |
| TreatCFM001476 | steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor aspartic-type endopeptidase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD UDP-L-rhamnose biosynthesis syringetin biosynthesis flavonol biosynthesis Flavonoid biosynthesis Flavonoid biosynthesis | details |
| TreatCFM001497 | prenyltransferase activity Terpenoid backbone biosynthesis Hippo signaling pathway -fly | details |
| TreatCFM001598 | protein tyrosine phosphatase activity steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor UDP-L-rhamnose biosynthesis EGFR tyrosine kinase inhibitor resistance | details |
Expression profiles
 Show details about module gene expression profiling |