TreatCFM000661 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| intramolecular lyase activity | 0.012693204 | GO:0016872 |
| Transcription_related, Transcription factor: NF-YA | 0.005696529 | gene family |
| Flavonoid biosynthesis | 0.018561519 | plantCyc |
| Flavonoid biosynthesis | 0.018561519 | plantCyc |
| Flavonoid biosynthesis | 0.046699683 | plantCyc |
| Cationic antimicrobial peptide (CAMP) resistance | 0.046699683 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g056720.2 | small and basic intrinsic protein 2;1 | AT3G56950 (1.00E-67) |
| Solyc02g069860.2 | nuclear factor Y, subunit A7 | AT1G30500 (2.00E-40) |
| Solyc02g082720.2 | Trypsin family protein with PDZ domain | AT5G27660 (2.00E-30) |
| Solyc05g052240.2 | Chalcone-flavanone isomerase family protein | AT5G05270 (7.00E-60) |
| Solyc07g042250.2 | chaperonin 20 | AT5G20720 (7.00E-100) |
| Solyc12g019460.1 | MAP kinase 6 | AT2G43790 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000340 | galactose metabolic process transcription coactivator activity UDP-glucose:hexose-1-phosphate uridylyltransferase activity Transcription_related, Transcription regulator: Coactivator p15 pyrimidine deoxyribonucleotides dephosphorylation stachyose degradation Pyrimidine metabolism | details |
| TreatCFM000498 | transcription coactivator activity lipid binding DNA binding Transcription_related, Transcription regulator: Coactivator p15 Transcription_related, Transcription regulator: HB triacylglycerol degradation Vitamin digestion and absorption | details |
| TreatCFM000662 | intramolecular lyase activity pseudouridine synthesis RNA modification pseudouridine synthase activity Flavonoid biosynthesis Flavonoid biosynthesis Flavonoid biosynthesis Cationic antimicrobial peptide (CAMP) resistance | details |
| TreatCFM000850 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity nucleobase-containing compound kinase activity isomerase activity terpenoid biosynthetic process cytoplasm nucleobase-containing compound metabolic process ATP binding protein folding methylerythritol phosphate pathway II methylerythritol phosphate pathway I UDP-glucose biosynthesis glucose and glucose-1-phosphate degradation sucrose biosynthesis II sucrose degradation III (sucrose invertase) starch biosynthesis adenosine ribonucleotides de novo biosynthesis Glycolysis / Gluconeogenesis Ribosome biogenesis in eukaryotes Terpenoid backbone biosynthesis | details |
| TreatCFM000981 | thiolester_hydrolase_activity pseudouridine synthesis RNA modification pseudouridine synthase activity fatty acid biosynthetic process drug transmembrane transport Transcription_related, Transcription factor: NF-YA oleate biosynthesis I (plants) Fatty acid biosynthesis Cationic antimicrobial peptide (CAMP) resistance | details |
| TreatCFM000982 | Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Transcription_related, Transcription factor: NF-YA Platinum drug resistance | details |
| TreatCFM000983 | chlorophyllide a oxygenase [overall] activity 2 iron, 2 sulfur cluster binding small GTPase mediated signal transduction chlorophyll cycle abscisic acid biosynthesis Carotenoid biosynthesis Porphyrin and chlorophyll metabolism | details |
| TreatCFM001076 | DNA replication DNA binding ATP binding Viral carcinogenesis Cationic antimicrobial peptide (CAMP) resistance | details |
| TreatCFM001605 | Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: WRKY 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Choline metabolism in cancer | details |
| TreatCFM001658 | polygalacturonate_4-alpha-galacturonosyltransferase_activity Transcription_related, Transcription factor: SBP formation of glycosidic bonds, GlycosylTransferases: GTnc homogalacturonan biosynthesis triacylglycerol degradation | details |
Expression profiles
 Show details about module gene expression profiling |