TreatCFM001132 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| eukaryotic translation initiation factor 3 complex | 0.003105632 | GO:0005852 |
| spindle_assembly | 0.004143825 | GO:0051225 |
| translational initiation | 0.00801538 | GO:0006413 |
| small protein activating enzyme activity | 0.012808153 | GO:0008641 |
| translation_initiation_factor_binding | 0.012808153 | GO:0031369 |
| translation initiation factor activity | 0.028182702 | GO:0003743 |
| Ubiquitin_Proteasome_system, E1: ThiF | 0.002243764 | gene family |
| Herpes simplex infection | 0.019703526 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g102570.2 | eukaryotic translation initiation factor 3C | AT3G56150 (1.00E-99) |
| Solyc03g046590.2 | AT5G38880 (0) | |
| Solyc08g078320.2 | ubiquitin-protein ligases | AT2G39810 (0) |
| Solyc09g018450.2 | ubiquitin-activating enzyme 1 | AT2G30110 (0) |
| Solyc10g017530.2 | RNAhelicase-like 8 | AT4G00660 (0) |
| Solyc11g072950.1 | AT3G46220 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000766 | nucleic acid binding isocitrate dehydrogenase (NADP+) activity mRNA guanylyltransferase activity nucleotide binding alanine-tRNA ligase activity isocitrate metabolic process 7-methylguanosine mRNA capping alanyl-tRNA aminoacylation ligase activity, forming aminoacyl-tRNA and related compounds tRNA charging glutamine biosynthesis III mRNA surveillance pathway Aminoacyl-tRNA biosynthesis Lipopolysaccharide biosynthesis | details |
| TreatCFM000855 | Protein_kinases_phosphatases, PPC:4.1.6: Unknown Function Kinase Transcription_related, Transcription regulator: C3H | details |
| TreatCFM001133 | eukaryotic translation initiation factor 3 complex translation_initiation_factor_binding Ran_GTPase_binding spindle_assembly translation initiation factor activity translational initiation proline biosynthesis I Carbapenem biosynthesis | details |
| TreatCFM001264 | histone_H3_acetylation regulation_of_DNA_methylation histone acetyltransferase activity Transcription_related, Transcription regulator: SNF2 Transcription_related, Transcription factor: faR1 Transcription_related, Transcription regulator: PHD Transcription_related, Transcription factor: B3 UTP and CTP dephosphorylation II pyrimidine deoxyribonucleotides de novo biosynthesis I | details |
| TreatCFM001301 | proline biosynthesis I Carbapenem biosynthesis Lipopolysaccharide biosynthesis Lysosome Herpes simplex infection hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001317 | small protein activating enzyme activity tRNA aminoacylation tRNA binding aminoacyl-tRNA ligase activity Ubiquitin_Proteasome_system, E1: ThiF tRNA charging Aminoacyl-tRNA biosynthesis Vitamin digestion and absorption | details |
| TreatCFM001522 | nucleic acid binding anaphase-promoting complex regulation of mitotic metaphase/anaphase transition metalloexopeptidase activity aminopeptidase activity tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity Transcription_related, Transcription factor: C2H2 tRNA charging Aminoacyl-tRNA biosynthesis Herpes simplex infection | details |
| TreatCFM001525 | organic substance metabolic process intramolecular transferase activity, phosphotransferases UDP-N-acetyl-D-glucosamine biosynthesis II Amino sugar and nucleotide sugar metabolism | details |
Expression profiles
 Show details about module gene expression profiling |