TreatCFM001317 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| small protein activating enzyme activity | 2.58125E-05 | GO:0008641 |
| tRNA aminoacylation | 0.006213948 | GO:0043039 |
| tRNA binding | 0.006899677 | GO:0000049 |
| aminoacyl-tRNA ligase activity | 0.02948928 | GO:0004812 |
| Ubiquitin_Proteasome_system, E1: ThiF | 2.26E-06 | gene family |
| tRNA charging | 0.010834567 | plantCyc |
| Aminoacyl-tRNA biosynthesis | 0.029810147 | KEGG |
| Vitamin digestion and absorption | 0.029810147 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g109960.2 | SUMO-activating enzyme 2 | AT2G21470 (0) |
| Solyc02g081580.2 | NC domain-containing protein-related | AT3G02700 (2.00E-84) |
| Solyc02g090860.2 | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | AT4G39280 (0) |
| Solyc08g005570.2 | Protein of unknown function, DUF647 | AT3G45890 (0) |
| Solyc09g018450.2 | ubiquitin-activating enzyme 1 | AT2G30110 (0) |
| Solyc09g090940.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | AT5G43960 (7.00E-79) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000595 | small protein activating enzyme activity carbohydrate binding Ubiquitin_Proteasome_system, E1: ThiF Ubiquitin_Proteasome_system, E3 adaptor: SKP1 Homologous recombination Lipopolysaccharide biosynthesis | details |
| TreatCFM001132 | eukaryotic translation initiation factor 3 complex spindle_assembly translational initiation small protein activating enzyme activity translation_initiation_factor_binding translation initiation factor activity Ubiquitin_Proteasome_system, E1: ThiF Herpes simplex infection | details |
| TreatCFM001176 | glycerol metabolic process tRNA aminoacylation glycerone kinase activity tRNA binding cytoplasm aminoacyl-tRNA ligase activity Transcription_related, Transcription regulator: SNF2 tRNA charging Aminoacyl-tRNA biosynthesis RIG-I-like receptor signaling pathway | details |
| TreatCFM001530 | tRNA aminoacylation tRNA binding microtubule-based movement microtubule motor activity aminoacyl-tRNA ligase activity microtubule binding ATP binding tRNA charging Aminoacyl-tRNA biosynthesis | details |
| TreatCFM001616 | diaminopimelate epimerase activity lysine biosynthetic process via diaminopimelate intracellular Transcription_related, Transcription regulator: C3H lysine biosynthesis VI Lysine biosynthesis | details |
| TreatCFM001618 | ion transport amino_acid_transmembrane_transport amino acid transmembrane transporter activity transporter activity Vitamin digestion and absorption | details |
Expression profiles
 Show details about module gene expression profiling |