TreatCFM001513 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| protein domain specific binding | 0.003020886 | GO:0019904 |
| glycopeptide_alpha-N-acetylgalactosaminidase_activity | 0.003020886 | GO:0033926 |
| cis-Golgi network | 0.004352267 | GO:0005801 |
| Golgi membrane | 0.004352267 | GO:0000139 |
| ER to Golgi vesicle-mediated transport | 0.007335171 | GO:0006888 |
| integral to membrane | 0.011272175 | GO:0016021 |
| Starch and sucrose metabolism | 0.033377656 | KEGG |
| hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | 0.001438849 | gene famuly |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g091020.2 | golgi snare 12 | AT2G45200 (5.00E-114) |
| Solyc04g074510.2 | GF14 protein phi chain | AT1G35160 (1.00E-123) |
| Solyc04g076340.2 | ||
| Solyc06g065210.2 | cytosolic invertase 2 | AT4G09510 (0) |
| Solyc07g020790.2 | Major facilitator superfamily protein | AT1G67300 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000228 | cis-Golgi network Golgi membrane ER to Golgi vesicle-mediated transport transmembrane_transporter_activity integral to membrane signal transduction | details |
| TreatCFM000229 | mannose-6-phosphate isomerase activity carbohydrate metabolic process GDP-mannose_biosynthetic_process cis-Golgi network Golgi membrane ER to Golgi vesicle-mediated transport cellular glucan metabolic process apoplast xyloglucan:xyloglucosyl transferase activity D-mannose degradation mannitol biosynthesis GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Plant hormone signal transduction Biofilm formation - Pseudomonas aeruginosa hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM000356 | protein domain specific binding phospholipid remodeling (phosphatidylcholine, yeast) phosphatidylcholine acyl editing phospholipases Choline metabolism in cancer | details |
| TreatCFM000506 | protein domain specific binding Ubiquitin_Proteasome_system, E3 adaptor: F-box ethylene biosynthesis I (plants) pyridine nucleotide cycling (plants) Cysteine and methionine metabolism Nicotinate and nicotinamide metabolism | details |
| TreatCFM000910 | glycopeptide_alpha-N-acetylgalactosaminidase_activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Choline metabolism in cancer hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001012 | Golgi membrane cis-Golgi network ER to Golgi vesicle-mediated transport Transcription_related, Transcription factor: ERF | details |
| TreatCFM001077 | ADP-dependent NAD(P)H-hydrate dehydratase activity nucleosome assembly nucleosome protein domain specific binding NADH repair sporopollenin precursor biosynthesis Monoterpenoid biosynthesis | details |
| TreatCFM001169 | detection_of_visible_light protein-chromophore linkage protein domain specific binding two-component sensor activity volatile benzenoid biosynthesis I (ester formation) | details |
| TreatCFM001227 | response to metal ion oxygen binding protein domain specific binding Transcription_related, Transcription factor: MIKC formaldehyde oxidation II (glutathione-dependent) Chemical carcinogenesis | details |
| TreatCFM001400 | riboflavin kinase activity riboflavin biosynthetic process protein domain specific binding Transcription_related, Transcription regulator: C3H flavin biosynthesis I (bacteria and plants) Riboflavin metabolism | details |
| TreatCFM001503 | protein domain specific binding phosphoric diester hydrolase activity DNA repair Fanconi anemia pathway | details |
Expression profiles
 Show details about module gene expression profiling |