LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE015248

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE015248

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE015248AT4G29840.1Pyridoxal-5'-phosphate-dependent enzyme family protein1positive
GWHGAAZE010986AT1G10830.215-cis-zeta-carotene isomerase0.96positive
GWHGAAZE009607AT2G33150.1peroxisomal 3-ketoacyl-CoA thiolase 30.96positive
GWHGAAZE010985AT1G10830.115-cis-zeta-carotene isomerase0.96positive
GWHGAAZE010940AT1G10830.115-cis-zeta-carotene isomerase0.96positive
GWHGAAZE032774AT4G39330.1cinnamyl alcohol dehydrogenase 90.96positive
GWHGAAZE024940AT1G12600.1UDP-N-acetylglucosamine (UAA) transporter family0.95positive
GWHGAAZE015247AT5G35460.1membrane protein;(source:Araport11)0.95positive
GWHGAAZE023782AT2G22590.1UDP-Glycosyltransferase superfamily protein0.93positive
GWHGAAZE030764AT5G50700.1hydroxysteroid dehydrogenase 10.93positive
GWHGAAZE032292AT1G64940.1cytochrome P450, family 87, subfamily A, polypeptide 60.93positive
GWHGAAZE015961AT5G17540.1HXXXD-type acyl-transferase family protein0.93positive
GWHGAAZE020925AT1G05680.1Uridine diphosphate glycosyltransferase 74E20.93positive
GWHGAAZE030090AT5G17540.1HXXXD-type acyl-transferase family protein0.93positive
GWHGAAZE015914AT5G54160.1O-methyltransferase 10.93positive
GWHGAAZE004197AT2G15490.3UDP-glycosyltransferase 73B40.93positive
GWHGAAZE010955AT5G39530.1Protein of unknown function (DUF1997)0.92positive
GWHGAAZE032753AT4G15560.1Deoxyxylulose-5-phosphate synthase0.92positive
GWHGAAZE007756AT5G37550.1hypothetical protein;(source:Araport11)0.92positive
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)0.92positive
GWHGAAZE023781AT2G22590.1UDP-Glycosyltransferase superfamily protein0.92positive
GWHGAAZE030766AT5G50700.1hydroxysteroid dehydrogenase 10.92positive
GWHGAAZE032950AT5G26030.2ferrochelatase 10.92positive
GWHGAAZE014135AT3G16150.1N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein0.92positive
GWHGAAZE015066AT1G76490.1hydroxy methylglutaryl CoA reductase 10.92positive
GWHGAAZE023847----0.91positive
GWHGAAZE009597AT3G07090.1PPPDE putative thiol peptidase family protein0.91positive
GWHGAAZE014864AT5G66450.2Phosphatidic acid phosphatase (PAP2) family protein0.91positive
GWHGAAZE033143AT3G28960.1Transmembrane amino acid transporter family protein0.91positive
GWHGAAZE006238AT4G16563.1Eukaryotic aspartyl protease family protein0.91positive
GWHGAAZE023416AT4G37260.1myb domain protein 730.91positive
GWHGAAZE031972AT3G05200.1RING/U-box superfamily protein0.91positive
GWHGAAZE019600AT3G05290.1peroxisomal adenine nucleotide carrier 10.91positive
GWHGAAZE004808AT4G05000.2Vacuolar protein sorting-associated protein VPS28 family protein0.9positive
GWHGAAZE021159AT4G15550.1indole-3-acetate beta-D-glucosyltransferase0.9positive
GWHGAAZE008933AT2G36090.1F-box family protein0.9positive
GWHGAAZE008133AT1G60690.1NAD(P)-linked oxidoreductase superfamily protein0.9positive
GWHGAAZE009694AT5G24530.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.9positive
GWHGAAZE020602AT5G35917.1cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene0.9positive
GWHGAAZE002744AT5G54250.2cyclic nucleotide-gated cation channel 40.9positive
GWHGAAZE023133AT3G28960.1Transmembrane amino acid transporter family protein0.9positive
GWHGAAZE010951AT5G39530.1Protein of unknown function (DUF1997)0.89positive
GWHGAAZE023138AT3G51550.1Malectin/receptor-like protein kinase family protein0.89positive
GWHGAAZE020659AT5G04940.2SU(VAR)3-9 homolog 10.89positive
GWHGAAZE002831AT4G27030.1fatty acid desaturase A0.89positive
GWHGAAZE001672AT5G16440.1isopentenyl diphosphate isomerase 10.89positive
GWHGAAZE002743AT5G41550.1Disease resistance protein (TIR-NBS-LRR class) family0.89positive
GWHGAAZE013027AT2G38110.1glycerol-3-phosphate acyltransferase 60.89positive
GWHGAAZE018278AT1G29420.1SAUR-like auxin-responsive protein family 0.89positive
GWHGAAZE007315AT4G37870.1phosphoenolpyruvate carboxykinase 10.89positive
GWHGAAZE020924AT2G43820.1UDP-glucosyltransferase 74F20.89positive
GWHGAAZE023132AT5G15240.1Transmembrane amino acid transporter family protein0.89positive
GWHGAAZE014322AT1G34780.1APR-like 40.89positive
GWHGAAZE003978AT5G06570.2alpha/beta-Hydrolases superfamily protein0.89positive
GWHGAAZE027631AT4G11820.2hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase0.89positive
GWHGAAZE019222----0.89positive
GWHGAAZE000653AT2G30040.1mitogen-activated protein kinase kinase kinase 140.88positive
GWHGAAZE023779AT5G65550.1UDP-Glycosyltransferase superfamily protein0.88positive
GWHGAAZE020611AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.88positive
GWHGAAZE024117AT1G77280.1Protein kinase protein with adenine nucleotide alpha hydrolases-like domain0.88positive
GWHGAAZE010959AT5G39530.1Protein of unknown function (DUF1997)0.88positive
GWHGAAZE030759AT3G02230.1reversibly glycosylated polypeptide 10.88positive
GWHGAAZE009574AT3G25110.1fatA acyl-ACP thioesterase0.88positive
GWHGAAZE033794AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.88positive
GWHGAAZE025303AT3G27880.1Protein of unknown function (DUF1645)0.88positive
GWHGAAZE012671----0.88positive
GWHGAAZE032243AT4G15560.1Deoxyxylulose-5-phosphate synthase0.88positive
GWHGAAZE015882AT1G21920.1Histone H3 K4-specific methyltransferase SET7/9 family protein0.88positive
GWHGAAZE015166AT4G39330.1cinnamyl alcohol dehydrogenase 90.88positive
GWHGAAZE020599AT2G22330.1cytochrome P450, family 79, subfamily B, polypeptide 30.87positive
GWHGAAZE005955AT5G53110.1RING/U-box superfamily protein0.87positive
GWHGAAZE007720AT1G65890.1acyl activating enzyme 120.87positive
GWHGAAZE028415AT5G26030.2ferrochelatase 10.87positive
GWHGAAZE023777AT5G12010.1nuclease;(source:Araport11)0.87positive
GWHGAAZE027634AT1G62990.1KNOTTED-like homeobox of Arabidopsis thaliana 70.87positive
GWHGAAZE014540AT2G23450.2Protein kinase superfamily protein0.87positive
GWHGAAZE000665AT5G05580.1fatty acid desaturase 80.87positive
GWHGAAZE027621AT1G12640.1MBOAT (membrane bound O-acyl transferase) family protein0.87positive
GWHGAAZE023143AT3G51550.1Malectin/receptor-like protein kinase family protein0.87positive
GWHGAAZE033124AT3G47500.1cycling DOF factor 30.87positive
GWHGAAZE009352AT2G30040.1mitogen-activated protein kinase kinase kinase 140.87positive
GWHGAAZE004198AT1G22370.2UDP-glucosyl transferase 85A50.87positive
GWHGAAZE010941AT1G10830.115-cis-zeta-carotene isomerase0.87positive
GWHGAAZE032015AT4G15560.1Deoxyxylulose-5-phosphate synthase0.87positive
GWHGAAZE026088AT5G25110.1CBL-interacting protein kinase 250.86positive
GWHGAAZE022349AT3G19970.1alpha/beta-Hydrolases superfamily protein0.86positive
GWHGAAZE007369AT1G18390.1Protein kinase superfamily protein0.86positive
GWHGAAZE011697AT1G08970.4nuclear factor Y, subunit C90.86positive
GWHGAAZE033236AT5G14880.1Potassium transporter family protein0.86positive
GWHGAAZE023964AT1G36940.1myotubularin-like protein;(source:Araport11)0.86positive
GWHGAAZE025068AT1G02090.1Proteasome component (PCI) domain protein0.86positive
GWHGAAZE023130AT3G28960.1Transmembrane amino acid transporter family protein0.86positive
GWHGAAZE023896AT1G71960.1ATP-binding casette family G250.86positive
GWHGAAZE033207AT5G14970.1seed maturation-like protein;(source:Araport11)0.86positive


Expression profiling, GSEA and motif analysis