LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE023416

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE023416

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE023416AT4G37260.1myb domain protein 731positive
GWHGAAZE023777AT5G12010.1nuclease;(source:Araport11)0.95positive
GWHGAAZE031972AT3G05200.1RING/U-box superfamily protein0.95positive
GWHGAAZE027620AT1G12710.1phloem protein 2-A120.94positive
GWHGAAZE023964AT1G36940.1myotubularin-like protein;(source:Araport11)0.94positive
GWHGAAZE014540AT2G23450.2Protein kinase superfamily protein0.94positive
GWHGAAZE022275AT1G48040.1Protein phosphatase 2C family protein0.94positive
GWHGAAZE004808AT4G05000.2Vacuolar protein sorting-associated protein VPS28 family protein0.93positive
GWHGAAZE006238AT4G16563.1Eukaryotic aspartyl protease family protein0.93positive
GWHGAAZE010940AT1G10830.115-cis-zeta-carotene isomerase0.93positive
GWHGAAZE020925AT1G05680.1Uridine diphosphate glycosyltransferase 74E20.93positive
GWHGAAZE000653AT2G30040.1mitogen-activated protein kinase kinase kinase 140.92positive
GWHGAAZE028415AT5G26030.2ferrochelatase 10.92positive
GWHGAAZE020659AT5G04940.2SU(VAR)3-9 homolog 10.92positive
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)0.92positive
GWHGAAZE001078AT2G27690.1cytochrome P450, family 94, subfamily C, polypeptide 10.92positive
GWHGAAZE007089AT2G41900.1CCCH-type zinc finger protein with ARM repeat domain0.92positive
GWHGAAZE032292AT1G64940.1cytochrome P450, family 87, subfamily A, polypeptide 60.92positive
GWHGAAZE007315AT4G37870.1phosphoenolpyruvate carboxykinase 10.92positive
GWHGAAZE014135AT3G16150.1N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein0.92positive
GWHGAAZE005036AT2G37040.1PHE ammonia lyase 10.92positive
GWHGAAZE015555AT5G20050.1Protein kinase superfamily protein0.92positive
GWHGAAZE030090AT5G17540.1HXXXD-type acyl-transferase family protein0.92positive
GWHGAAZE022349AT3G19970.1alpha/beta-Hydrolases superfamily protein0.91positive
GWHGAAZE005955AT5G53110.1RING/U-box superfamily protein0.91positive
GWHGAAZE007720AT1G65890.1acyl activating enzyme 120.91positive
GWHGAAZE000173AT1G03840.1C2H2 and C2HC zinc fingers superfamily protein0.91positive
GWHGAAZE011697AT1G08970.4nuclear factor Y, subunit C90.91positive
GWHGAAZE015248AT4G29840.1Pyridoxal-5'-phosphate-dependent enzyme family protein0.91positive
GWHGAAZE008933AT2G36090.1F-box family protein0.91positive
GWHGAAZE002831AT4G27030.1fatty acid desaturase A0.91positive
GWHGAAZE003577AT5G52510.1SCARECROW-like 80.91positive
GWHGAAZE010985AT1G10830.115-cis-zeta-carotene isomerase0.91positive
GWHGAAZE004253AT3G54780.1Zinc finger (C3HC4-type RING finger) family protein0.91positive
GWHGAAZE032774AT4G39330.1cinnamyl alcohol dehydrogenase 90.91positive
GWHGAAZE033794AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.91positive
GWHGAAZE006117AT1G12630.1Integrase-type DNA-binding superfamily protein0.91positive
GWHGAAZE031241AT2G44810.1alpha/beta-Hydrolases superfamily protein0.91positive
GWHGAAZE008243AT3G12120.2fatty acid desaturase 20.91positive
GWHGAAZE009352AT2G30040.1mitogen-activated protein kinase kinase kinase 140.91positive
GWHGAAZE003978AT5G06570.2alpha/beta-Hydrolases superfamily protein0.91positive
GWHGAAZE023895AT1G71960.1ATP-binding casette family G250.91positive
GWHGAAZE026088AT5G25110.1CBL-interacting protein kinase 250.9positive
GWHGAAZE008998AT1G08250.1arogenate dehydratase 60.9positive
GWHGAAZE009607AT2G33150.1peroxisomal 3-ketoacyl-CoA thiolase 30.9positive
GWHGAAZE020611AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.9positive
GWHGAAZE027295AT1G50640.1ethylene responsive element binding factor 30.9positive
GWHGAAZE024117AT1G77280.1Protein kinase protein with adenine nucleotide alpha hydrolases-like domain0.9positive
GWHGAAZE030759AT3G02230.1reversibly glycosylated polypeptide 10.9positive
GWHGAAZE004154AT5G03990.1FK506-binding-like protein;(source:Araport11)0.9positive
GWHGAAZE028883AT5G25400.1Nucleotide-sugar transporter family protein0.9positive
GWHGAAZE015961AT5G17540.1HXXXD-type acyl-transferase family protein0.9positive
GWHGAAZE019600AT3G05290.1peroxisomal adenine nucleotide carrier 10.9positive
GWHGAAZE015066AT1G76490.1hydroxy methylglutaryl CoA reductase 10.9positive
GWHGAAZE032775AT4G37980.1elicitor-activated gene 3-10.9positive
GWHGAAZE021989AT3G23000.1CBL-interacting protein kinase 70.9positive
GWHGAAZE018616AT1G27730.1salt tolerance zinc finger0.9positive
GWHGAAZE015166AT4G39330.1cinnamyl alcohol dehydrogenase 90.9positive
GWHGAAZE023133AT3G28960.1Transmembrane amino acid transporter family protein0.9positive
GWHGAAZE010986AT1G10830.215-cis-zeta-carotene isomerase0.89positive
GWHGAAZE018110AT1G73760.1RING/U-box superfamily protein0.89positive
GWHGAAZE023138AT3G51550.1Malectin/receptor-like protein kinase family protein0.89positive
GWHGAAZE001672AT5G16440.1isopentenyl diphosphate isomerase 10.89positive
GWHGAAZE015247AT5G35460.1membrane protein;(source:Araport11)0.89positive
GWHGAAZE011073AT4G13640.1Homeodomain-like superfamily protein0.89positive
GWHGAAZE023130AT3G28960.1Transmembrane amino acid transporter family protein0.89positive
GWHGAAZE027621AT1G12640.1MBOAT (membrane bound O-acyl transferase) family protein0.89positive
GWHGAAZE002562AT1G30040.1gibberellin 2-oxidase0.89positive
GWHGAAZE020602AT5G35917.1cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene0.89positive
GWHGAAZE025165AT2G44430.1DNA-binding bromodomain-containing protein0.89positive
GWHGAAZE032950AT5G26030.2ferrochelatase 10.89positive
GWHGAAZE023132AT5G15240.1Transmembrane amino acid transporter family protein0.89positive
GWHGAAZE025303AT3G27880.1Protein of unknown function (DUF1645)0.89positive
GWHGAAZE012671----0.89positive
GWHGAAZE024437AT2G25490.1EIN3-binding F box protein 10.89positive
GWHGAAZE007586AT2G17760.1Eukaryotic aspartyl protease family protein0.88positive
GWHGAAZE012341AT1G56720.3Protein kinase superfamily protein0.88positive
GWHGAAZE007756AT5G37550.1hypothetical protein;(source:Araport11)0.88positive
GWHGAAZE000642AT2G30040.1mitogen-activated protein kinase kinase kinase 140.88positive
GWHGAAZE023943AT1G22710.1sucrose-proton symporter 20.88positive
GWHGAAZE015067AT3G25640.1Protein of unknown function, DUF6170.88positive
GWHGAAZE005525AT2G29050.1RHOMBOID-like 10.88positive
GWHGAAZE033143AT3G28960.1Transmembrane amino acid transporter family protein0.88positive
GWHGAAZE030179AT4G38690.1PLC-like phosphodiesterases superfamily protein0.88positive
GWHGAAZE009276----0.88positive
GWHGAAZE023896AT1G71960.1ATP-binding casette family G250.88positive
GWHGAAZE020654AT1G73100.1SU(VAR)3-9 homolog 30.88positive
GWHGAAZE029245AT3G05545.1RING/U-box superfamily protein0.88positive
GWHGAAZE009047AT2G28200.1C2H2-type zinc finger family protein0.88positive
GWHGAAZE003054AT1G79160.1filamentous hemagglutinin transporter;(source:Araport11)0.88positive
GWHGAAZE009397AT2G38360.1prenylated RAB acceptor 1.B40.88positive
GWHGAAZE009693AT5G24530.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.88positive
GWHGAAZE019222----0.88positive
GWHGAAZE020599AT2G22330.1cytochrome P450, family 79, subfamily B, polypeptide 30.87positive
GWHGAAZE004715AT5G54390.1HAL2-like0.87positive
GWHGAAZE009597AT3G07090.1PPPDE putative thiol peptidase family protein0.87positive
GWHGAAZE030764AT5G50700.1hydroxysteroid dehydrogenase 10.87positive
GWHGAAZE020600AT5G05260.1cytochrome p450 79a20.87positive
GWHGAAZE031137AT1G53840.1pectin methylesterase 10.87positive
GWHGAAZE003636AT1G35910.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein0.87positive
GWHGAAZE003572AT5G23950.1Calcium-dependent lipid-binding (CaLB domain) family protein0.87positive
GWHGAAZE020601AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.87positive
GWHGAAZE002743AT5G41550.1Disease resistance protein (TIR-NBS-LRR class) family0.87positive
GWHGAAZE026119AT4G31780.2monogalactosyl diacylglycerol synthase 10.87positive
GWHGAAZE030075AT2G16400.1BEL1-like homeodomain 70.87positive
GWHGAAZE003257----0.87positive
GWHGAAZE017211AT5G49830.1exocyst complex component 84B0.87positive
GWHGAAZE023143AT3G51550.1Malectin/receptor-like protein kinase family protein0.87positive
GWHGAAZE014322AT1G34780.1APR-like 40.87positive
GWHGAAZE032243AT4G15560.1Deoxyxylulose-5-phosphate synthase0.87positive
GWHGAAZE005288AT5G01990.1Auxin efflux carrier family protein0.86positive
GWHGAAZE009065AT2G28120.1Major facilitator superfamily protein0.86positive
GWHGAAZE014864AT5G66450.2Phosphatidic acid phosphatase (PAP2) family protein0.86positive
GWHGAAZE027163AT1G53050.1Protein kinase superfamily protein0.86positive
GWHGAAZE027634AT1G62990.1KNOTTED-like homeobox of Arabidopsis thaliana 70.86positive
GWHGAAZE026642AT3G11410.1protein phosphatase 2CA0.86positive
GWHGAAZE012404AT5G23130.1Peptidoglycan-binding LysM domain-containing protein0.86positive
GWHGAAZE033202----0.86positive
GWHGAAZE012739AT5G53110.1RING/U-box superfamily protein0.86positive
GWHGAAZE019423AT3G05500.1Rubber elongation factor protein (REF)0.86positive
GWHGAAZE020924AT2G43820.1UDP-glucosyltransferase 74F20.86positive
GWHGAAZE014218AT1G09960.1sucrose transporter 40.86positive
GWHGAAZE033207AT5G14970.1seed maturation-like protein;(source:Araport11)0.86positive
GWHGAAZE012652AT4G10430.3TMPIT-like protein0.86positive
GWHGAAZE025297AT5G14760.1L-aspartate oxidase0.86positive
GWHGAAZE019908AT4G29950.1Ypt/Rab-GAP domain of gyp1p superfamily protein0.86positive


Expression profiling, GSEA and motif analysis