LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE029214

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE029214

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE029214AT1G11680.1CYTOCHROME P450 51G11positive
GWHGAAZE020868AT1G06800.1alpha/beta-Hydrolases superfamily protein-0.66negative
GWHGAAZE023022AT1G24360.1NAD(P)-binding Rossmann-fold superfamily protein-0.65negative
GWHGAAZE025082AT4G09320.1Nucleoside diphosphate kinase family protein-0.65negative
GWHGAAZE016177AT5G09360.1laccase 14-0.64negative
GWHGAAZE015925AT1G01720.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein-0.63negative
GWHGAAZE015039AT4G35510.1PHD finger-like protein;(source:Araport11)-0.63negative
GWHGAAZE008845AT2G27510.1ferredoxin 3-0.63negative
GWHGAAZE008201AT4G12070.1hypothetical protein;(source:Araport11)-0.63negative
GWHGAAZE032574AT2G15490.3UDP-glycosyltransferase 73B4-0.63negative
GWHGAAZE026760AT2G30860.1glutathione S-transferase PHI 9-0.63negative
GWHGAAZE013965AT1G19640.1jasmonic acid carboxyl methyltransferase-0.63negative
GWHGAAZE014229AT5G64460.8Phosphoglycerate mutase family protein-0.63negative
GWHGAAZE005521AT5G02230.2Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.62negative
GWHGAAZE029940AT5G53380.1O-acyltransferase (WSD1-like) family protein-0.62negative
GWHGAAZE015050AT5G65980.1Auxin efflux carrier family protein-0.62negative
GWHGAAZE004884AT4G22260.1Alternative oxidase family protein-0.62negative
GWHGAAZE008554AT2G26930.14-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase-0.62negative
GWHGAAZE004807AT5G28237.1Pyridoxal-5'-phosphate-dependent enzyme family protein-0.61negative
GWHGAAZE026945AT1G11740.1ankyrin repeat family protein-0.61negative
GWHGAAZE020895AT1G06800.1alpha/beta-Hydrolases superfamily protein-0.61negative
GWHGAAZE029487AT2G02370.2SNARE associated Golgi protein family-0.61negative
GWHGAAZE009047AT2G28200.1C2H2-type zinc finger family protein-0.61negative
GWHGAAZE000650AT5G05580.1fatty acid desaturase 8-0.61negative
GWHGAAZE033316AT3G27330.1zinc finger (C3HC4-type RING finger) family protein-0.61negative
GWHGAAZE009115AT2G29380.1highly ABA-induced PP2C gene 3-0.61negative
GWHGAAZE015202AT5G65380.1MATE efflux family protein-0.6negative
GWHGAAZE029931AT3G49200.1O-acyltransferase (WSD1-like) family protein-0.6negative
GWHGAAZE000652AT1G07150.1mitogen-activated protein kinase kinase kinase 13-0.6negative
GWHGAAZE000665AT5G05580.1fatty acid desaturase 8-0.6negative
GWHGAAZE025552AT1G80160.2Lactoylglutathione lyase / glyoxalase I family protein-0.6negative
GWHGAAZE031459AT2G46340.1SPA (suppressor of phyA-105) protein family-0.6negative
GWHGAAZE029941AT3G49190.1O-acyltransferase (WSD1-like) family protein-0.6negative
GWHGAAZE021688AT3G05290.1peroxisomal adenine nucleotide carrier 1-0.6negative
GWHGAAZE031642AT5G06710.1homeobox from Arabidopsis thaliana-0.59negative
GWHGAAZE028398AT2G26040.1PYR1-like 2-0.59negative
GWHGAAZE030858AT2G32070.1Polynucleotidyl transferase, ribonuclease H-like superfamily protein-0.59negative
GWHGAAZE008931AT3G44326.1F-box family protein-0.59negative
GWHGAAZE015101AT5G17230.2PHYTOENE SYNTHASE-0.59negative
GWHGAAZE010911AT5G39530.1Protein of unknown function (DUF1997)-0.59negative
GWHGAAZE002724AT4G27410.2NAC (No Apical Meristem) domain transcriptional regulator superfamily protein-0.59negative
GWHGAAZE015166AT4G39330.1cinnamyl alcohol dehydrogenase 9-0.59negative
GWHGAAZE007881AT5G65140.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.58negative
GWHGAAZE000642AT2G30040.1mitogen-activated protein kinase kinase kinase 14-0.58negative
GWHGAAZE024394AT1G33290.1P-loop containing nucleoside triphosphate hydrolases superfamily protein-0.58negative
GWHGAAZE033819AT1G09310.1Protein of unknown function, DUF538-0.58negative
GWHGAAZE001397AT3G12630.1A20/AN1-like zinc finger family protein-0.58negative
GWHGAAZE000986AT4G05160.1AMP-dependent synthetase and ligase family protein-0.58negative
GWHGAAZE013963AT2G21520.1Sec14p-like phosphatidylinositol transfer family protein-0.58negative
GWHGAAZE014359AT1G77930.2Chaperone DnaJ-domain superfamily protein-0.58negative
GWHGAAZE023207AT3G18990.1AP2/B3-like transcriptional factor family protein-0.58negative
GWHGAAZE029932AT3G49190.1O-acyltransferase (WSD1-like) family protein-0.58negative
GWHGAAZE025498AT3G54900.1CAX interacting protein 1-0.58negative
GWHGAAZE012173AT4G15563.1F-box-like protein;(source:Araport11)-0.58negative
GWHGAAZE010922AT5G39530.1Protein of unknown function (DUF1997)-0.58negative
GWHGAAZE031807AT1G30760.1FAD-binding Berberine family protein-0.58negative
GWHGAAZE015926AT1G01720.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein-0.58negative
GWHGAAZE030287AT1G17830.1Protein of unknown function (DUF789)-0.58negative
GWHGAAZE023254AT2G23610.1methyl esterase 3-0.58negative
GWHGAAZE009561AT4G31940.1cytochrome P450, family 82, subfamily C, polypeptide 4-0.58negative
GWHGAAZE012920-----0.58negative
GWHGAAZE010955AT5G39530.1Protein of unknown function (DUF1997)-0.57negative
GWHGAAZE003997AT3G55290.1NAD(P)-binding Rossmann-fold superfamily protein-0.57negative
GWHGAAZE016368AT1G10070.2branched-chain amino acid transaminase 2-0.57negative
GWHGAAZE027993AT5G45410.3Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.-0.57negative
GWHGAAZE006151AT4G22920.1non-yellowing 1-0.57negative
GWHGAAZE008897AT2G27510.1ferredoxin 3-0.57negative
GWHGAAZE028622AT2G25605.1DNA-directed RNA polymerase subunit beta;(source:Araport11)-0.57negative
GWHGAAZE027634AT1G62990.1KNOTTED-like homeobox of Arabidopsis thaliana 7-0.57negative
GWHGAAZE003216AT2G39710.1Eukaryotic aspartyl protease family protein-0.57negative
GWHGAAZE018698AT2G14110.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.57negative
GWHGAAZE017896AT5G40250.1RING/U-box superfamily protein-0.57negative
GWHGAAZE007315AT4G37870.1phosphoenolpyruvate carboxykinase 1-0.57negative
GWHGAAZE018844AT1G22930.1T-complex protein 11-0.57negative
GWHGAAZE006092AT4G11570.2Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.57negative
GWHGAAZE028420AT4G32940.1gamma vacuolar processing enzyme-0.57negative
GWHGAAZE031061AT1G54130.1RELA/SPOT homolog 3-0.57negative
GWHGAAZE008932AT2G36090.1F-box family protein-0.57negative
GWHGAAZE016649AT1G78610.1mechanosensitive channel of small conductance-like 6-0.57negative
GWHGAAZE005528AT2G28930.1protein kinase 1B-0.57negative
GWHGAAZE016087AT4G19950.1polyadenylate-binding protein 1-B-binding protein;(source:Araport11)-0.57negative
GWHGAAZE018483AT4G34350.14-hydroxy-3-methylbut-2-enyl diphosphate reductase-0.57negative
GWHGAAZE022707AT2G37240.1Thioredoxin superfamily protein-0.57negative
GWHGAAZE015882AT1G21920.1Histone H3 K4-specific methyltransferase SET7/9 family protein-0.57negative
GWHGAAZE028839AT5G11160.1adenine phosphoribosyltransferase 5-0.57negative
GWHGAAZE023511AT1G10140.1Uncharacterised conserved protein UCP031279-0.57negative
GWHGAAZE008921AT2G27310.1F-box family protein-0.57negative
GWHGAAZE031973AT3G05210.1nucleotide repair protein, putative-0.56negative
GWHGAAZE009117AT5G60600.14-hydroxy-3-methylbut-2-enyl diphosphate synthase-0.56negative
GWHGAAZE015011AT3G51430.1Calcium-dependent phosphotriesterase superfamily protein-0.56negative
GWHGAAZE008929AT2G36090.1F-box family protein-0.56negative
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)-0.56negative
GWHGAAZE023781AT2G22590.1UDP-Glycosyltransferase superfamily protein-0.56negative
GWHGAAZE030294AT1G73390.3Endosomal targeting BRO1-like domain-containing protein-0.56negative
GWHGAAZE026827AT1G06290.1acyl-CoA oxidase 3-0.56negative
GWHGAAZE006238AT4G16563.1Eukaryotic aspartyl protease family protein-0.56negative
GWHGAAZE009837AT3G63010.1alpha/beta-Hydrolases superfamily protein-0.56negative
GWHGAAZE029252AT3G11480.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein-0.56negative
GWHGAAZE033552AT5G57360.1Galactose oxidase/kelch repeat superfamily protein-0.56negative
GWHGAAZE016356AT3G53690.1RING/U-box superfamily protein-0.56negative
GWHGAAZE000641AT1G07150.1mitogen-activated protein kinase kinase kinase 13-0.56negative
GWHGAAZE007689AT5G65960.1GTP binding-0.56negative
GWHGAAZE019600AT3G05290.1peroxisomal adenine nucleotide carrier 1-0.56negative
GWHGAAZE020925AT1G05680.1Uridine diphosphate glycosyltransferase 74E2-0.56negative
GWHGAAZE028430AT2G25930.1hydroxyproline-rich glycoprotein family protein-0.56negative
GWHGAAZE015203AT5G65380.1MATE efflux family protein-0.56negative
GWHGAAZE014255AT5G10490.1MSCS-like 2-0.56negative
GWHGAAZE025638AT4G13250.1NAD(P)-binding Rossmann-fold superfamily protein-0.56negative
GWHGAAZE005950AT4G23895.2Pleckstrin homology (PH) domain-containing protein-0.56negative


Expression profiling, GSEA and motif analysis