PH01000055G1160's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G39690 : 1.10E-97
Blast annotation: -
2.Location
Scaffold: PH01000055
Strand: -
| Region | Start | End |
| gene | 837769 | 845022 |
| mRNA | 837769 | 845022 |
| exon | 837769 | 838148 |
| exon | 838609 | 838710 |
| exon | 839726 | 839905 |
| exon | 840026 | 840103 |
| exon | 841324 | 841443 |
| exon | 841533 | 841625 |
| exon | 843053 | 843130 |
| exon | 843415 | 843558 |
| exon | 843645 | 843734 |
| exon | 844369 | 845022 |
| CDS | 837918 | 838148 |
| CDS | 838609 | 838710 |
| CDS | 839726 | 839905 |
| CDS | 840026 | 840103 |
| CDS | 841324 | 841443 |
| CDS | 841533 | 841625 |
| CDS | 843053 | 843130 |
| CDS | 843415 | 843558 |
| CDS | 843645 | 843734 |
| CDS | 844369 | 844887 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000611 | WNK_NRBP (from iTAK) PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001055 | NF-YB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001449 | WNK_NRBP (from iTAK) CAMK_CAMKL-CHK1 (from iTAK) |
| coexpression network | CFinderM001509 | Fatty_acid_metabolism alpha-Linolenic_acid_metabolism Ribosome nuclear pore, fatty acid metabolic process, translation, DNA integration, 3-hydroxyacyl-CoA_dehydrogenase_activity |
| coexpression network | CFinderM001532 | GT1 GlycosylTransferases sucrose-phosphate synthase activity, lipid glycosylation, positive_regulation_of_transcription,_DNA-templated cis-Golgi network, thylakoid, transcription initiation from RNA polymerase II promoter, fructose_6-phosphate_metabolic_process photosystem I, 6-phosphofructokinase complex, sucrose metabolic process, |
| coexpression network | CFinderM001534 | DNA integration, translation, nuclear pore, large ribosomal subunit, glycerol ether metabolic process, |
| coexpression network | CFinderM001654 | WNK_NRBP (from iTAK) RNA_transport |
| coexpression network | CFinderM001743 | |
| coexpression network | CFinderM001822 | protein processing, PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001847 | peptide-methionine_(R)-S-oxide_reductase_activity binding, metallopeptidase activity, |
| coexpression network | CFinderM001857 | protein processing, antioxidant activity, peroxiredoxin activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09731.8 | Mitofilin | 203 | 538 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.