PH01000092G1150's details annotation
1.Annotation
ICBR annotation: dehydrogenase E1 component domain containing protein, expressed
Blast result AT1G59900 : 1.00E-168
Blast annotation: pyruvate dehydrogenase complex E1 alpha subunit
2.Location
Scaffold: PH01000092
Strand: -
| Region | Start | End |
| gene | 795959 | 802213 |
| mRNA | 795959 | 802213 |
| exon | 795959 | 796065 |
| exon | 796506 | 796571 |
| exon | 796851 | 796922 |
| exon | 797010 | 797105 |
| exon | 799253 | 799330 |
| exon | 799882 | 799961 |
| exon | 800058 | 802213 |
| CDS | 796021 | 796065 |
| CDS | 796506 | 796571 |
| CDS | 796851 | 796922 |
| CDS | 797010 | 797105 |
| CDS | 799253 | 799330 |
| CDS | 799882 | 799961 |
| CDS | 800058 | 800739 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001595 | dephosphorylation, Butanoate_metabolism Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
| coexpression network | CFinderM001650 | sphingolipid metabolic process, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, glucosylceramidase activity, Butanoate_metabolism Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis serine-type carboxypeptidase activity, nucleotidyltransferase activity, |
| coexpression network | CFinderM001675 | GT47 GlycosylTransferases dephosphorylation, Butanoate_metabolism oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
| coexpression network | CFinderM001679 | PHD Transcription_Regulator(from iTAK) oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Butanoate_metabolism nucleotidyltransferase activity, serine-type carboxypeptidase activity, Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
| coexpression network | CFinderM001830 | WASH_complex drug_binding oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Butanoate_metabolism Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00676.19 | E1_dh | 66 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] | ko00010 | K00161 |
| Citrate cycle (TCA cycle) | pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] | ko00020 | K00161 |
| Pyruvate metabolism | pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] | ko00620 | K00161 |
| Butanoate metabolism | pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] | ko00650 | K00161 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016624 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.