PH01000101G0880's details annotation
1.Annotation
ICBR annotation: tubulin/FtsZ domain containing protein, putative, expressed
Blast result AT1G64740 : 0.00E+00
Blast annotation: alpha-1 tubulin
2.Location
Scaffold: PH01000101
Strand: -
| Region | Start | End |
| gene | 530668 | 533562 |
| mRNA | 530668 | 533562 |
| exon | 530668 | 531133 |
| exon | 531257 | 531765 |
| exon | 532351 | 532550 |
| exon | 532986 | 533562 |
| CDS | 530794 | 531133 |
| CDS | 531257 | 531765 |
| CDS | 532351 | 532550 |
| CDS | 532986 | 533472 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001214 | PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VII-2 (from iTAK) protein complex, microtubule, microtubule-based process, translational initiation, protein polymerization, RLK-Pelle_DLSV (from iTAK) Phagosome RNA_transport |
| coexpression network | CFinderM001226 | protein complex, microtubule, translational initiation, microtubule-based process, protein polymerization, GTP_catabolic_process Phagosome RNA_transport |
| coexpression network | CFinderM001843 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis PLATZ Transcription_Regulator(from iTAK) protein complex, microtubule, TRAF Transcription_Regulator(from iTAK) branched chain family amino acid metabolic process, branched-chain-amino-acid transaminase activity, protein polymerization, translational initiation, microtubule-based process, Pantothenate_and_CoA_biosynthesis structural constituent of cytoskeleton, |
| coexpression network | CFinderM001844 | PLATZ Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) microtubule, protein complex, Plant_hormone_signal_transduction Phagosome protein polymerization, microtubule-based process, |
| coexpression network | CFinderM001845 | protein complex, microtubule, PLATZ Transcription_Regulator(from iTAK) Phagosome mRNA_surveillance_pathway CAMK_CAMKL-CHK1 (from iTAK) protein polymerization, microtubule-based process, dephosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00091.24 | Tubulin | 3 | 214 |
| PF03953.16 | Tubulin_C | 263 | 391 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Phagosome | tubulin alpha | ko04145 | K07374 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005200 | structural constituent of cytoskeleton |
| GO:0005525 | GTP binding |
| GO:0005874 | microtubule |
| GO:0006184 | GTP catabolic process |
| GO:0007017 | microtubule-based process |
| GO:0043234 | protein complex |
| GO:0051258 | protein polymerization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.