PH01000123G1430's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT2G02560 : 0.00E+00
Blast annotation: cullin-associated and neddylation dissociated
2.Location
Scaffold: PH01000123
Strand: +
| Region | Start | End |
| gene | 1001278 | 1015181 |
| mRNA | 1001278 | 1015181 |
| exon | 1001278 | 1001705 |
| exon | 1001810 | 1001979 |
| exon | 1002494 | 1002704 |
| exon | 1004648 | 1004813 |
| exon | 1004911 | 1005040 |
| exon | 1005432 | 1005438 |
| exon | 1005627 | 1005784 |
| exon | 1005865 | 1005988 |
| exon | 1006189 | 1006239 |
| exon | 1006328 | 1006410 |
| exon | 1006709 | 1006793 |
| exon | 1006863 | 1006964 |
| exon | 1007041 | 1007139 |
| exon | 1007221 | 1007289 |
| exon | 1007409 | 1007492 |
| exon | 1007557 | 1007697 |
| exon | 1008205 | 1008297 |
| exon | 1008416 | 1008537 |
| exon | 1008619 | 1008781 |
| exon | 1008855 | 1009091 |
| exon | 1009792 | 1010061 |
| exon | 1010126 | 1010311 |
| exon | 1010405 | 1010551 |
| exon | 1010662 | 1010778 |
| exon | 1010915 | 1011083 |
| exon | 1011504 | 1011581 |
| exon | 1011663 | 1011801 |
| exon | 1012072 | 1012153 |
| exon | 1012565 | 1012673 |
| exon | 1014591 | 1015181 |
| CDS | 1001670 | 1001705 |
| CDS | 1001810 | 1001979 |
| CDS | 1002494 | 1002704 |
| CDS | 1004648 | 1004813 |
| CDS | 1004911 | 1005040 |
| CDS | 1005432 | 1005438 |
| CDS | 1005627 | 1005784 |
| CDS | 1005865 | 1005988 |
| CDS | 1006189 | 1006239 |
| CDS | 1006328 | 1006410 |
| CDS | 1006709 | 1006793 |
| CDS | 1006863 | 1006964 |
| CDS | 1007041 | 1007139 |
| CDS | 1007221 | 1007289 |
| CDS | 1007409 | 1007492 |
| CDS | 1007557 | 1007697 |
| CDS | 1008205 | 1008297 |
| CDS | 1008416 | 1008537 |
| CDS | 1008619 | 1008781 |
| CDS | 1008855 | 1009091 |
| CDS | 1009792 | 1010061 |
| CDS | 1010126 | 1010311 |
| CDS | 1010405 | 1010551 |
| CDS | 1010662 | 1010778 |
| CDS | 1010915 | 1011083 |
| CDS | 1011504 | 1011581 |
| CDS | 1011663 | 1011801 |
| CDS | 1012072 | 1012153 |
| CDS | 1012565 | 1012673 |
| CDS | 1014591 | 1014838 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001743 | |
| coexpression network | CFinderM001787 | protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, cellular protein modification process, binding, |
| coexpression network | CFinderM001824 | rRNA modification, rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, tRNA aminoacylation, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001846 | rRNA modification, rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, tRNA aminoacylation, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001847 | peptide-methionine_(R)-S-oxide_reductase_activity binding, metallopeptidase activity, |
| coexpression network | CFinderM001887 | microtubule organizing center, spindle pole, nuclear pore, microtubule cytoskeleton organization, C2H2 Transcription_Regulator(from PlantTFDB) RNA_transport |
| coexpression network | CFinderM001892 | phenylalanyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation, phenylalanine-tRNA ligase activity, WRKY Transcription_Regulator(from PlantTFDB) tRNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08623.9 | TIP120 | 998 | 1160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.