PH01000287G0350's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G17695 : 6.70E-58
Blast annotation: -
2.Location
Scaffold: PH01000287
Strand: -
| Region | Start | End |
| gene | 179323 | 186688 |
| mRNA | 179323 | 186688 |
| exon | 179323 | 179739 |
| exon | 179912 | 180119 |
| exon | 180200 | 180492 |
| exon | 183602 | 183659 |
| exon | 184711 | 184774 |
| exon | 185231 | 186688 |
| CDS | 179545 | 179739 |
| CDS | 179912 | 180119 |
| CDS | 180200 | 180492 |
| CDS | 183602 | 183659 |
| CDS | 184711 | 184774 |
| CDS | 185231 | 185486 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000188 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001342 | |
| coexpression network | CFinderM001377 | C2H2 Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001829 | retrograde transport, endosome to Golgi, proton transport, hydrogen-translocating pyrophosphatase activity, inorganic diphosphatase activity, Ether_lipid_metabolism WRKY Transcription_Regulator(from PlantTFDB) Glycerophospholipid_metabolism Oxidative_phosphorylation |
| coexpression network | CFinderM001892 | phenylalanyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation, phenylalanine-tRNA ligase activity, WRKY Transcription_Regulator(from PlantTFDB) tRNA binding, |
| coexpression network | CFinderM001893 | Golgi-associated vesicle, Terpenoid_backbone_biosynthesis membrane coat, COPI vesicle coat, isoprenoid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09348.9 | DUF1990 | 190 | 345 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.