Gene details

Annotation of co-expression genes

PH01000790G0590's details annotation

1.Annotation

ICBR annotation: PHS1, putative, expressed

Blast result AT5G23720 : 1.00E-180
Blast annotation: dual specificity protein phosphatase family protein

2.Location

Scaffold: PH01000790
Strand: -

Region	Start	End
gene	451423	455634
mRNA	451423	455634
exon	451423	452008
exon	452110	452267
exon	452354	452581
exon	452659	452805
exon	453111	454149
exon	454257	454417
exon	454473	455634
CDS	451639	452008
CDS	452110	452267
CDS	452354	452581
CDS	452659	452805
CDS	453111	454149
CDS	454257	454417
CDS	454473	454565

UCSC genome browser

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000906	HSF Transcription_Regulator(from PlantTFDB) protein ADP-ribosylation, dephosphorylation, protein methylation, Base_excision_repair
coexpression network	CFinderM001329	Endocytosis selenium binding, dephosphorylation, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, protein dephosphorylation, cell redox homeostasis,
coexpression network	CFinderM001330	selenium binding, dephosphorylation, protein tyrosine/serine/threonine phosphatase activity, protein tyrosine phosphatase activity, Endocytosis mRNA_surveillance_pathway phosphatase activity, protein dephosphorylation, cell redox homeostasis,
coexpression network	CFinderM001331	protein dephosphorylation, microtubule organizing center, spindle pole, dephosphorylation, microtubule cytoskeleton organization, C2H2 Transcription_Regulator(from PlantTFDB) isoprenoid biosynthetic process, selenium binding,
coexpression network	CFinderM001698	Steroid_biosynthesis endodeoxyribonuclease activity, producing 5'-phosphomonoesters, sterol_24-C-methyltransferase_activity single-stranded DNA binding, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, WRKY Transcription_Regulator(from PlantTFDB) dephosphorylation, steroid biosynthetic process,
coexpression network	CFinderM001845	protein complex, microtubule, PLATZ Transcription_Regulator(from iTAK) Phagosome mRNA_surveillance_pathway CAMK_CAMKL-CHK1 (from iTAK) protein polymerization, microtubule-based process, dephosphorylation,
coexpression network	CFinderM001886	Steroid_biosynthesis ubiquitin ligase complex, sterol_24-C-methyltransferase_activity dephosphorylation, steroid biosynthetic process, mRNA_surveillance_pathway protein ubiquitination, protein dephosphorylation,
coexpression network	CFinderM001897	phosphatase activity, mRNA_surveillance_pathway dephosphorylation, protein dephosphorylation, protein ubiquitination, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, ubiquitin ligase complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF09192.9	Act-Frag_cataly	3	167
PF00782.19	DSPc	518	641

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0004725	protein tyrosine phosphatase activity
GO:0006470	protein dephosphorylation
GO:0008138	protein tyrosine/serine/threonine phosphatase activity
GO:0016311	dephosphorylation
GO:0016772	transferase activity, transferring phosphorus-containing groups
GO:0016773	phosphotransferase activity, alcohol group as acceptor
GO:0016791	phosphatase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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