PH01001004G0380's details annotation
1.Annotation
ICBR annotation: SIT4 phosphatase-associated protein domain containing protein, expressed
Blast result AT1G30470 : 0.00E+00
Blast annotation: SIT4 phosphatase-associated family protein
2.Location
Scaffold: PH01001004
Strand: +
| Region | Start | End |
| gene | 317856 | 326687 |
| mRNA | 317856 | 326687 |
| exon | 317856 | 318143 |
| exon | 318234 | 318350 |
| exon | 318620 | 318700 |
| exon | 318868 | 318870 |
| exon | 320570 | 320673 |
| exon | 321266 | 321352 |
| exon | 321441 | 321516 |
| exon | 321633 | 321707 |
| exon | 321886 | 321939 |
| exon | 322235 | 322294 |
| exon | 322381 | 322497 |
| exon | 322715 | 322809 |
| exon | 323112 | 323314 |
| exon | 323484 | 323581 |
| exon | 323986 | 324089 |
| exon | 324170 | 324335 |
| exon | 324419 | 324541 |
| exon | 324648 | 324730 |
| exon | 324817 | 324958 |
| exon | 325241 | 325270 |
| exon | 325808 | 325878 |
| exon | 325977 | 326687 |
| CDS | 318051 | 318143 |
| CDS | 318234 | 318350 |
| CDS | 318620 | 318700 |
| CDS | 318868 | 318870 |
| CDS | 320570 | 320673 |
| CDS | 321266 | 321352 |
| CDS | 321441 | 321516 |
| CDS | 321633 | 321707 |
| CDS | 321886 | 321939 |
| CDS | 322235 | 322294 |
| CDS | 322381 | 322497 |
| CDS | 322715 | 322809 |
| CDS | 323112 | 323314 |
| CDS | 323484 | 323581 |
| CDS | 323986 | 324089 |
| CDS | 324170 | 324335 |
| CDS | 324419 | 324541 |
| CDS | 324648 | 324730 |
| CDS | 324817 | 324958 |
| CDS | 325241 | 325270 |
| CDS | 325808 | 325878 |
| CDS | 325977 | 326562 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000195 | pyridoxine biosynthetic process, S-adenosylmethionine_biosynthetic_process proteolysis, pyridoxamine-phosphate oxidase activity, oxidoreductase activity, acting on the CH-NH2 group of donors, methionine adenosyltransferase activity, Endocytosis aminopeptidase activity, |
| coexpression network | CFinderM000296 | aspartic-type endopeptidase activity, proteolysis, drug transmembrane transport, drug transmembrane transporter activity, antiporter activity, |
| coexpression network | CFinderM000324 | pyridoxine biosynthetic process, S-adenosylmethionine_biosynthetic_process GT8 GlycosylTransferases pyridoxamine-phosphate oxidase activity, oxidoreductase activity, acting on the CH-NH2 group of donors, methionine adenosyltransferase activity, |
| coexpression network | CFinderM000360 | protein arginylation, arginyltransferase activity, RNA_degradation MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000937 | |
| coexpression network | CFinderM000990 | MBF1 Transcription_Regulator(from iTAK) RNA_degradation |
| coexpression network | CFinderM001235 | ubiquitin ligase complex, protein ubiquitination, binding, Ubiquitin_mediated_proteolysis RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04499.14 | SAPS | 216 | 442 |
| PF04499.14 | SAPS | 440 | 574 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.