PH01001174G0310's details annotation
1.Annotation
ICBR annotation: OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed
Blast result AT1G52260 : 2.00E-144
Blast annotation: PDI-like 1-5
2.Location
Scaffold: PH01001174
Strand: -
| Region | Start | End |
| gene | 198339 | 203436 |
| mRNA | 198339 | 203436 |
| exon | 198339 | 198637 |
| exon | 198728 | 198781 |
| exon | 199463 | 199597 |
| exon | 199720 | 199797 |
| exon | 200340 | 200408 |
| exon | 200487 | 200558 |
| exon | 200867 | 200953 |
| exon | 201069 | 201149 |
| exon | 201421 | 201539 |
| exon | 201924 | 202089 |
| exon | 202228 | 202357 |
| exon | 202458 | 203436 |
| CDS | 198521 | 198637 |
| CDS | 198728 | 198781 |
| CDS | 199463 | 199597 |
| CDS | 199720 | 199797 |
| CDS | 200340 | 200408 |
| CDS | 200487 | 200558 |
| CDS | 200867 | 200953 |
| CDS | 201069 | 201149 |
| CDS | 201421 | 201539 |
| CDS | 201924 | 202089 |
| CDS | 202228 | 202357 |
| CDS | 202458 | 202942 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001368 | Protein_processing_in_endoplasmic_reticulum cell redox homeostasis, endoplasmic reticulum, |
| coexpression network | CFinderM001491 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, glucose-6-phosphate isomerase activity, sterol_24-C-methyltransferase_activity GTP cyclohydrolase II activity, riboflavin biosynthetic process, steroid biosynthetic process, gluconeogenesis, isoprenoid biosynthetic process, |
| coexpression network | CFinderM001503 | methyltransferase activity, DNA metabolic process, nuclease activity, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) cell redox homeostasis, Nucleotide_excision_repair |
| coexpression network | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity, Riboflavin_metabolism riboflavin biosynthetic process, isoprenoid biosynthetic process, nucleic acid binding, Terpenoid_backbone_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00085.19 | Thioredoxin | 69 | 171 |
| PF13848.5 | Thioredoxin_6 | 201 | 383 |
| PF00085.19 | Thioredoxin | 407 | 510 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | protein disulfide-isomerase A1 [EC:5.3.4.1] | ko04141 | K09580 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.