PH01001424G0230's details annotation
1.Annotation
ICBR annotation: glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Blast result AT3G46570 : 6.20E-83
Blast annotation: Glycosyl hydrolase superfamily protein
2.Location
Scaffold: PH01001424
Strand: +
| Region | Start | End |
| gene | 165899 | 175044 |
| mRNA | 165899 | 175044 |
| exon | 165899 | 166472 |
| exon | 166562 | 167035 |
| exon | 167128 | 167379 |
| exon | 167486 | 167563 |
| exon | 167996 | 168044 |
| exon | 169396 | 169736 |
| exon | 169846 | 169944 |
| exon | 170037 | 170257 |
| exon | 171597 | 171666 |
| exon | 171767 | 171889 |
| exon | 172084 | 172188 |
| exon | 172488 | 172603 |
| exon | 173579 | 173643 |
| exon | 174527 | 175044 |
| CDS | 166005 | 166472 |
| CDS | 166562 | 167035 |
| CDS | 167128 | 167379 |
| CDS | 167486 | 167563 |
| CDS | 167996 | 168044 |
| CDS | 169396 | 169736 |
| CDS | 169846 | 169944 |
| CDS | 170037 | 170257 |
| CDS | 171597 | 171666 |
| CDS | 171767 | 171889 |
| CDS | 172084 | 172188 |
| CDS | 172488 | 172603 |
| CDS | 173579 | 173643 |
| CDS | 174527 | 174720 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000967 | TKL-Pl-1 (from iTAK) GH17 Glycoside_Hydrolases phosphate-containing compound metabolic process, phospholipid transport, magnesium ion binding, |
| coexpression network | CFinderM001280 | GH17 Glycoside_Hydrolases Arginine_and_proline_metabolism phospholipid transport, |
| coexpression network | CFinderM001513 | Glycine,_serine_and_threonine_metabolism GH17 Glycoside_Hydrolases L-serine biosynthetic process, phosphoglycerate dehydrogenase activity, Methane_metabolism cofactor binding, |
| coexpression network | CFinderM001709 | GH17 Glycoside_Hydrolases Arginine_and_proline_metabolism |
| coexpression network | CFinderM001801 | GH17 Glycoside_Hydrolases phospholipid transport, phosphatidylinositol metabolic process, Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system RNA_degradation Arginine_and_proline_metabolism Phagosome |
| coexpression network | CFinderM001827 | ARID Transcription_Regulator(from iTAK) GH17 Glycoside_Hydrolases Arginine_and_proline_metabolism ion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH17 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00332.17 | Glyco_hydro_17 | 155 | 309 |
| PF11891.7 | RETICULATA-like | 572 | 712 |
| PF11891.7 | RETICULATA-like | 760 | 838 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.