PH01001710G0310's details annotation
1.Annotation
ICBR annotation: nucleolar protein NOP5-1, putative
Blast result AT3G05060 : 8.00E-140
Blast annotation: NOP56-like pre RNA processing ribonucleoprotein
2.Location
Scaffold: PH01001710
Strand: +
| Region | Start | End |
| gene | 190537 | 200513 |
| mRNA | 190537 | 200513 |
| exon | 190537 | 191037 |
| exon | 191142 | 191183 |
| exon | 192228 | 192405 |
| exon | 192880 | 193133 |
| exon | 193215 | 193506 |
| exon | 193896 | 193966 |
| exon | 194196 | 194318 |
| exon | 194395 | 194529 |
| exon | 194853 | 195192 |
| exon | 196467 | 196533 |
| exon | 198258 | 198372 |
| exon | 198536 | 198820 |
| exon | 198965 | 199204 |
| exon | 199831 | 200513 |
| CDS | 190960 | 191037 |
| CDS | 191142 | 191183 |
| CDS | 192228 | 192405 |
| CDS | 192880 | 193133 |
| CDS | 193215 | 193506 |
| CDS | 193896 | 193966 |
| CDS | 194196 | 194318 |
| CDS | 194395 | 194529 |
| CDS | 194853 | 195192 |
| CDS | 196467 | 196533 |
| CDS | 198258 | 198372 |
| CDS | 198536 | 198820 |
| CDS | 198965 | 199204 |
| CDS | 199831 | 200073 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000347 | Pantothenate_and_CoA_biosynthesis Valine,_leucine_and_isoleucine_degradation CMGC_CDK-CRK7-CDK9 (from iTAK) pantothenate kinase activity, coenzyme A biosynthetic process, Propanoate_metabolism beta-Alanine_metabolism |
| coexpression network | CFinderM000790 | RLK-Pelle_LRR-VIII-1 (from iTAK) CMGC_CDK-CRK7-CDK9 (from iTAK) GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK) |
| coexpression network | CFinderM000966 | TKL-Pl-1 (from iTAK) CMGC_CDK-CRK7-CDK9 (from iTAK) protein phosphorylation, chloride transport, CAMK_CAMKL-CHK1 (from iTAK) transferase activity, transferring phosphorus-containing groups, voltage-gated chloride channel activity, protein kinase activity, ion channel activity, ATP binding, |
| coexpression network | CFinderM000974 | CMGC_CDKL-Os (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) Glycerolipid_metabolism |
| coexpression network | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) RNA_degradation membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08156.12 | NOP5NT | 2 | 65 |
| PF01798.17 | Nop | 130 | 351 |
| PF00069.24 | Pkinase | 560 | 648 |
| PF00069.24 | Pkinase | 662 | 816 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.