Gene details

Annotation of co-expression genes

PH01001817G0340's details annotation

1.Annotation

ICBR annotation: FHA domain containing protein, putative, expressed

Blast result AT5G47790 : 3.00E-116
Blast annotation: SMAD/FHA domain-containing protein

2.Location

Scaffold: PH01001817
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001554	protein retention in ER lumen, ER retention sequence binding, peptidyl-prolyl cis-trans isomerase activity, acid-amino acid ligase activity,
coexpression network	CFinderM001580	iron-sulfur cluster assembly, RNA processing,
coexpression network	CFinderM001678	mRNA_cleavage_and_polyadenylation_specificity_factor_complex mRNA cleavage, protein retention in ER lumen, mRNA_polyadenylation RNA metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity ER retention sequence binding,
coexpression network	CFinderM001798	proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00498.25	FHA	199	265

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0005515	protein binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.