PH01002557G0220's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT1G17370 : 2.00E-158
Blast annotation: oligouridylate binding protein 1B
2.Location
Scaffold: PH01002557
Strand: +
| Region | Start | End |
| gene | 135012 | 138047 |
| mRNA | 135012 | 138047 |
| exon | 135012 | 135505 |
| exon | 135933 | 136022 |
| exon | 136397 | 136482 |
| exon | 136594 | 136767 |
| exon | 137090 | 138047 |
| CDS | 135412 | 135505 |
| CDS | 135933 | 136022 |
| CDS | 136397 | 136482 |
| CDS | 136594 | 136767 |
| CDS | 137090 | 137353 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001647 | phenylalanyl-tRNA aminoacylation, phenylalanine-tRNA ligase activity, tRNA binding, tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis aminoacyl-tRNA ligase activity, fumarate metabolic process, nucleotide binding, magnesium ion binding, tricarboxylic acid cycle enzyme complex, fumarate hydratase activity, cytoplasm, mitochondrial outer membrane, RNA binding, tricarboxylic acid cycle, Carbon_fixation_pathways_in_prokaryotes Citrate_cycle_(TCA_cycle) lyase activity, |
| coexpression network | CFinderM001775 | myosin complex, TBP-class_protein_binding Fructose_and_mannose_metabolism Basal_transcription_factors Amino_sugar_and_nucleotide_sugar_metabolism motor activity, |
| coexpression network | CFinderM001894 | AGC_NDR (from iTAK) Golgi apparatus, membrane coat, clathrin adaptor complex, nucleic acid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 81 | 147 |
| PF00076.21 | RRM_1 | 166 | 236 |
| PF00076.21 | RRM_1 | 287 | 353 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.