PH01003011G0140's details annotation
1.Annotation
ICBR annotation: SNF7 domain containing protein, putative, expressed
Blast result AT2G06530 : 3.40E-57
Blast annotation: SNF7 family protein
2.Location
Scaffold: PH01003011
Strand: +
| Region | Start | End |
| gene | 104065 | 107228 |
| mRNA | 104065 | 107228 |
| exon | 104065 | 104630 |
| exon | 105141 | 105401 |
| exon | 106153 | 107228 |
| CDS | 104541 | 104630 |
| CDS | 105141 | 105401 |
| CDS | 106153 | 106293 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000347 | Pantothenate_and_CoA_biosynthesis Valine,_leucine_and_isoleucine_degradation CMGC_CDK-CRK7-CDK9 (from iTAK) pantothenate kinase activity, coenzyme A biosynthetic process, Propanoate_metabolism beta-Alanine_metabolism |
| coexpression network | CFinderM001019 | protein transport, |
| coexpression network | CFinderM001086 | Pantothenate_and_CoA_biosynthesis tRNA processing, methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03357.20 | Snf7 | 2 | 131 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.