PH01003357G0110's details annotation
1.Annotation
ICBR annotation: RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed
Blast result AT1G77470 : 1.00E-120
Blast annotation: replication factor C subunit 3
2.Location
Scaffold: PH01003357
Strand: +
| Region | Start | End |
| gene | 91437 | 98782 |
| mRNA | 91437 | 98782 |
| exon | 91437 | 92943 |
| exon | 93639 | 93805 |
| exon | 94459 | 94631 |
| exon | 95127 | 95206 |
| exon | 95290 | 95449 |
| exon | 95592 | 95673 |
| exon | 96074 | 96203 |
| exon | 96295 | 96358 |
| exon | 96463 | 96531 |
| exon | 97376 | 97702 |
| exon | 98093 | 98782 |
| CDS | 92790 | 92943 |
| CDS | 93639 | 93805 |
| CDS | 94459 | 94631 |
| CDS | 95127 | 95206 |
| CDS | 95290 | 95449 |
| CDS | 95592 | 95673 |
| CDS | 96074 | 96203 |
| CDS | 96295 | 96358 |
| CDS | 96463 | 96531 |
| CDS | 97376 | 97702 |
| CDS | 98093 | 98297 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000995 | nucleus, riboflavin kinase activity, RLK-Pelle_LRR-II (from iTAK) B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) Riboflavin_metabolism DNA_replication Mismatch_repair Nucleotide_excision_repair riboflavin biosynthetic process, response to hormone stimulus, |
| coexpression network | CFinderM001583 | endoplasmic reticulum, bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001584 | |
| coexpression network | CFinderM001875 | histone deacetylation, histone deacetylase activity, DNA_replication Mismatch_repair Nucleotide_excision_repair DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03215.14 | Rad17 | 27 | 205 |
| PF08542.10 | Rep_fac_C | 293 | 361 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| DNA replication | replication factor C subunit 3/5 | ko03030 | K10756 |
| Nucleotide excision repair | replication factor C subunit 3/5 | ko03420 | K10756 |
| Mismatch repair | replication factor C subunit 3/5 | ko03430 | K10756 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003677 | DNA binding |
| GO:0005524 | ATP binding |
| GO:0006260 | DNA replication |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.