PH01004030G0100's details annotation
1.Annotation
ICBR annotation: initiator tRNA phosphoribosyl transferase family protein, putative, expressed
Blast result AT2G40570 : 1.00E-162
Blast annotation: initiator tRNA phosphoribosyl transferase family protein
2.Location
Scaffold: PH01004030
Strand: +
| Region | Start | End |
| gene | 75640 | 81374 |
| mRNA | 75640 | 81374 |
| exon | 75640 | 76764 |
| exon | 77261 | 77430 |
| exon | 77967 | 78681 |
| exon | 79152 | 79255 |
| exon | 79335 | 79443 |
| exon | 79573 | 79632 |
| exon | 79898 | 80022 |
| exon | 80581 | 81374 |
| CDS | 76389 | 76764 |
| CDS | 77261 | 77430 |
| CDS | 77967 | 78681 |
| CDS | 79152 | 79255 |
| CDS | 79335 | 79443 |
| CDS | 79573 | 79632 |
| CDS | 79898 | 80022 |
| CDS | 80581 | 80598 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000732 | SNF2 Transcription_Regulator(from iTAK) transferase activity, transferring pentosyl groups, mRNA_surveillance_pathway |
| coexpression network | CFinderM000882 | GH35 Glycoside_Hydrolases transferase activity, transferring pentosyl groups, |
| coexpression network | CFinderM001436 | STE_STE20-Fray (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001628 | GH19 Glycoside_Hydrolases transferase activity, transferring pentosyl groups, chitinase activity, ER to Golgi vesicle-mediated transport, chitin catabolic process, cell wall macromolecule catabolic process, |
| coexpression network | CFinderM001785 | transferase activity, transferring pentosyl groups, Nicotinate_and_nicotinamide_metabolism Diterpenoid_biosynthesis |
| coexpression network | CFinderM001870 | Basal_transcription_factors SNF2 Transcription_Regulator(from iTAK) transferase activity, transferring pentosyl groups, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17184.3 | Rit1_C | 24 | 342 |
| PF04179.11 | Init_tRNA_PT | 448 | 553 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016763 | transferase activity, transferring pentosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.