PH01173539G0010's details annotation
1.Annotation
ICBR annotation: cyclic nucleotide-gated ion channel 1, putative, expressed
Blast result AT5G53130 : 2.70E-80
Blast annotation: cyclic nucleotide gated channel 1
2.Location
Scaffold: PH01173539
Strand: +
| Region | Start | End |
| gene | 13 | 666 |
| mRNA | 13 | 666 |
| exon | 13 | 666 |
| CDS | 13 | 666 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000746 | CMGC_DYRK-YAK (from iTAK) TKL-Pl-6 (from iTAK) |
| coexpression network | CFinderM001478 | GH47 Glycoside_Hydrolases purine ribonucleoside monophosphate biosynthetic process, IMP biosynthetic process, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, deaminase activity, AMP deaminase activity, potassium_ion_transmembrane_transport membrane, potassium ion transmembrane transporter activity, |
| coexpression network | CFinderM001621 | AGC_NDR (from iTAK) purine ribonucleoside monophosphate biosynthetic process, IMP biosynthetic process, ubiquitin ligase complex, G-protein coupled receptor signaling pathway, AMP deaminase activity, guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding deaminase activity, Spliceosome |
| coexpression network | CFinderM001814 | Spliceosome nucleotide binding, snRNA_binding nuclear mRNA splicing, via spliceosome, phospholipid transport, phospholipid-translocating ATPase activity, cation transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00027.28 | cNMP_binding | 10 | 99 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.