TissueCFM000193 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| starch biosynthesis | 0.022552536 | plantCyc |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc00g129880.1 | ||
| Solyc01g016660.1 | starch synthase 2 | |
| Solyc01g079990.1 | Eukaryotic aspartyl protease family protein | AT1G03220 (4.00E-51) |
| Solyc04g015870.1 | MuDR family transposase | |
| Solyc04g050340.1 | Ribosomal protein L11 family protein | |
| Solyc05g041710.1 | ||
| Solyc05g044570.1 | Helicase protein with RING/U-box domain | AT1G05120 (5.00E-72) |
| Solyc05g051100.1 | Flavin containing amine oxidoreductase family protein | |
| Solyc06g010020.1 | ||
| Solyc07g041360.1 | ||
| Solyc07g049620.1 | ||
| Solyc07g061700.1 | ||
| Solyc08g014460.1 | MuDR family transposase | |
| Solyc08g029010.1 | ||
| Solyc08g044220.1 | ||
| Solyc08g062060.1 | chromatin remodeling 31 | |
| Solyc08g065400.1 | Cysteine proteinases superfamily protein | |
| Solyc10g050240.1 | protein disulfide isomerases | AT3G19220 (1.00E-30) |
| Solyc10g055010.1 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | AT2G28230 (2.00E-53) |
| Solyc10g055280.1 | Leucine-rich repeat protein kinase family protein | |
| Solyc11g032180.1 | Transducin/WD40 repeat-like superfamily protein | |
| Solyc12g062710.1 | RING/FYVE/PHD zinc finger superfamily protein | AT2G02960 (2.00E-31) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000018 | cytochrome-c oxidase activity ribulose-bisphosphate carboxylase activity carbon fixation electron transport chain proton-transporting two-sector ATPase complex, proton-transporting domain aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) Calvin-Benson-Bassham cycle NAD/NADH phosphorylation and dephosphorylation Carbon fixation in photosynthetic organisms Non-alcoholic fatty liver disease (NAFLD) | details |
| TissueCFM000064 | regulation of transcription from RNA polymerase II promoter protein dimerization activity RNA_polymerase_II_transcription_cofactor_activity Transcription_related, Transcription factor: M-TYPE D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis Choline metabolism in cancer | details |
| TissueCFM000083 | valine degradation I 2-oxoisovalerate decarboxylation to isobutanoyl-CoA leucine degradation I isoleucine degradation I Valine, leucine and isoleucine degradation Antigen processing and presentation | details |
| TissueCFM000125 | crocetin esters biosynthesis | details |
| TissueCFM000200 | chloroplast | details |
| TissueCFM000224 | details | |
| TissueCFM000264 | telomere maintenance trans-zeatin biosynthesis | details |
| TissueCFM000273 | Transcription_related, Transcription factor: MYB-RELATED | details |
| TissueCFM000274 | Transcription_related, Transcription factor: zf-HD | details |
| TissueCFM000277 | details | |
| TissueCFM000345 | biosynthetic process NAD+ ADP-ribosyltransferase activity dimethylallyltranstransferase activity trans-zeatin biosynthesis methionine salvage cycle II (plants) ethylene biosynthesis I (plants) Longevity regulating pathway - worm | details |
| TissueCFM000371 | O-methyltransferase activity Ino80_complex RNA binding chrysoeriol biosynthesis methylquercetin biosynthesis superpathway of scopolin and esculin biosynthesis quercetin sulfate biosynthesis polymethylated quercetin biosynthesis scopoletin biosynthesis chlorogenic acid biosynthesis I simplecoumarins biosynthesis suberin monomers biosynthesis phenylpropanoids methylation (ice plant) Phenylpropanoid biosynthesis Isoquinoline alkaloid biosynthesis | details |
| TissueCFM000461 | spermine and spermidine degradation III | details |
Expression profiles
 Show details about module gene expression profiling |