TissueCFM000529 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| Arp2/3_complex-mediated_actin_nucleation | 0.00812521 | GO:0034314 |
| posttranscriptional_gene_silencing_by_RNA | 0.00812521 | GO:0035194 |
| regulation of actin filament polymerization | 0.00812521 | GO:0030833 |
| protein phosphorylation | 0.00812521 | GO:0006468 |
| Arp2/3_protein_complex | 0.01280023 | GO:0005885 |
| actin cytoskeleton | 0.01280023 | GO:0015629 |
| transcription cofactor activity | 0.024072005 | GO:0003712 |
| protein kinase activity | 0.024072005 | GO:0004672 |
| phospholipid binding | 0.024072005 | GO:0005543 |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.015511858 | gene family |
| Protein_kinases_phosphatases, PPC:5.2.1: Other Kinase | 0.024371739 | gene family |
| Cell cycle - yeast | 0.040950604 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g008950.2 | calmodulin 5 | AT2G27030 (2.00E-81) |
| Solyc01g112250.2 | Calcium-dependent protein kinase family protein | AT2G17290 (0) |
| Solyc03g118020.2 | TUDOR-SN protein 1 | AT5G07350 (0) |
| Solyc04g015970.2 | ATP-binding cassette A1 | AT2G41700 (0) |
| Solyc05g013070.2 | VH1-interacting kinase | AT1G14000 (0) |
| Solyc07g007820.2 | ENTH/ANTH/VHS superfamily protein | AT5G35200 (6.00E-166) |
| Solyc10g008340.2 | Protein of unknown function (DUF1421) | AT4G28300 (1.00E-67) |
| Solyc11g068610.1 | Arp2/3 complex, 34 kD subunit p34-Arc | AT1G30825 (3.00E-119) |
| Solyc12g007110.1 | proline extensin-like receptor kinase 1 | AT3G24550 (4.00E-172) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000490 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase formation of glycosidic bonds, GlycosylTransferases: GTnc xylogalacturonan biosynthesis pyruvate decarboxylation to acetyl CoA Central carbon metabolism in cancer | details |
| TissueCFM000756 | small protein activating enzyme activity cysteine-type endopeptidase activity phospholipid binding protein-heme linkage cytochrome complex assembly Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization plasma membrane Arp2/3_protein_complex actin cytoskeleton Ubiquitin_Proteasome_system, E1: ThiF | details |
| TissueCFM000817 | glutamate biosynthetic process oxidoreductase activity, acting on the CH-NH2 group of donors glutamate synthase activity nucleobase-containing compound kinase activity metabolic process nitrogen compound metabolic process nucleobase-containing compound metabolic process glutamate biosynthesis V acetate conversion to acetyl-CoA ammonia assimilation cycle II glutamine degradation I glutamine biosynthesis III adenosine ribonucleotides de novo biosynthesis Nitrogen metabolism Ribosome biogenesis in eukaryotes Methane metabolism | details |
| TissueCFM000994 | actin cytoskeleton Arp2/3_protein_complex metabolic process posttranscriptional_gene_silencing_by_RNA oxoglutarate dehydrogenase (succinyl-transferring) activity cofactor binding tricarboxylic acid cycle Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization thiamine pyrophosphate binding oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor transcription cofactor activity tRNA processing Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family 2-oxoglutarate decarboxylation to succinyl-CoA TCA cycle II (plants and fungi) TCA cycle variation V (plant) glycine cleavage pyruvate decarboxylation to acetyl CoA glyoxylate cycle valine degradation I glutamine biosynthesis III 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Tryptophan metabolism Valine, leucine and isoleucine degradation beta-Alanine metabolism Carbon fixation pathways in prokaryotes | details |
| TissueCFM001102 | ATPase activity transport vesicle docking involved in exocytosis metal ion transmembrane transporter activity ATP binding transmembrane transport Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) glycerophosphodiester degradation Glycerophospholipid metabolism | details |
| TissueCFM001192 | phosphatidylserine decarboxylase activity phospholipid biosynthetic process phospholipid binding Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase phosphatidylethanolamine biosynthesis I Glycerophospholipid metabolism | details |
| TissueCFM001404 | Arp2/3_protein_complex actin cytoskeleton vesicle docking involved in exocytosis regulation of actin filament polymerization Arp2/3_complex-mediated_actin_nucleation vesicle-mediated transport Transcription_related, Transcription factor: NAC RNA degradation | details |
Expression profiles
 Show details about module gene expression profiling |