TreatCFM000427 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| tRNA processing | 0.019965391 | GO:0008033 |
| Transcription_related, Transcription regulator: Jumonji | 0.046370636 | gene family |
| Ubiquitin_Proteasome_system, DUB: USP | 0.049460506 | gene family |
| RNA transport | 0.022126725 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g062940.2 | indeterminate(ID)-domain 2 | AT5G66730 (2.00E-82) |
| Solyc03g112600.2 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | AT5G63080 (7.00E-120) |
| Solyc04g051410.2 | ubiquitin-specific protease 27 | AT4G39370 (5.00E-62) |
| Solyc04g078510.2 | Rer1 family protein | AT4G39220 (4.00E-62) |
| Solyc06g065250.1 | MuDR family transposase | AT1G64260 (1.00E-35) |
| Solyc06g072820.2 | Tudor/PWWP/MBT superfamily protein | AT3G03140 (9.00E-49) |
| Solyc07g066290.2 | Chaperone DnaJ-domain superfamily protein | AT1G79030 (0) |
| Solyc08g014510.2 | Ran BP2/NZF zinc finger-like superfamily protein | AT1G70650 (7.00E-106) |
| Solyc08g074600.2 | RECQ helicase L2 | AT1G31360 (5.00E-41) |
| Solyc09g082390.1 | Pentatricopeptide repeat (PPR) superfamily protein | AT3G22670 (7.00E-124) |
| Solyc10g079160.1 | Ubiquitin carboxyl-terminal hydrolase family protein | AT2G39120 (2.00E-124) |
| Solyc11g005580.1 | mraW methylase family protein | AT5G10910 (3.00E-113) |
| Solyc12g036410.1 | Translation elongation factor EF1A/initiation factor IF2gamma family protein | AT5G10630 (0) |
| Solyc12g044370.1 | tRNAse Z4 | AT3G16260 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000114 | oxidoreductase activity, acting on the CH-CH group of donors ubiquitin-protein ligase activity coenzyme A biosynthesis I Pantothenate and CoA biosynthesis Steroid hormone biosynthesis | details |
| TreatCFM000289 | D-arabinono-1,4-lactone oxidase activity mitochondrion double-stranded DNA binding oxidoreductase activity iron-sulfur cluster binding Transcription_related, Transcription factor: mTERF sulfate reduction II (assimilatory) L-ascorbate biosynthesis I (L-galactose pathway) Sulfur metabolism Ascorbate and aldarate metabolism | details |
| TreatCFM000338 | hydrolase activity, acting on glycosyl bonds formation of glycosidic bonds, GlycosylTransferases: GTnc wogonin metabolism baicalein degradation (hydrogen peroxide detoxification) Longevity regulating pathway - mammal hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM000461 | cytoplasm GDP-mannose_biosynthetic_process phosphomannomutase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NAC L-ascorbate biosynthesis I (L-galactose pathway) GDP-mannose biosynthesis xylogalacturonan biosynthesis Streptomycin biosynthesis | details |
| TreatCFM000525 | SAGA-type_complex aspartic-type endopeptidase activity transcription_corepressor_activity microtubule Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family | details |
| TreatCFM000534 | dimethylallyltranstransferase activity biosynthetic process cis-zeatin biosynthesis Zeatin biosynthesis Metabolism of xenobiotics by cytochrome P450 | details |
| TreatCFM000728 | intracellular protein transport vesicle-mediated transport Transcription_related, Transcription factor: faR1 | details |
| TreatCFM000743 | tRNA processing intracellular formation of glycosidic bonds, GlycosylTransferases: GTnc acyl-CoA hydrolysis ω-hydroxylation of caprate and laurate RNA transport Bile secretion | details |
| TreatCFM000744 | protein complex assembly mitochondrion Viral carcinogenesis | details |
| TreatCFM000766 | nucleic acid binding isocitrate dehydrogenase (NADP+) activity mRNA guanylyltransferase activity nucleotide binding alanine-tRNA ligase activity isocitrate metabolic process 7-methylguanosine mRNA capping alanyl-tRNA aminoacylation ligase activity, forming aminoacyl-tRNA and related compounds tRNA charging glutamine biosynthesis III mRNA surveillance pathway Aminoacyl-tRNA biosynthesis Lipopolysaccharide biosynthesis | details |
| TreatCFM000914 | tocopherol_cyclase_activity Cytochrome_P450, Cytochrome P450: CYP89A indole-3-acetate activation I vitamin E biosynthesis (tocotrienols) L-ascorbate degradation V hydroxyjasmonate sulfate biosynthesis vitamin E biosynthesis (tocotrienols) ascorbate glutathione cycle Ubiquinone and other terpenoid-quinone biosynthesis Glutathione metabolism Toluene degradation | details |
| TreatCFM000974 | mRNA_cis_splicing,_via_spliceosome mRNA_transport protein_targeting_to_peroxisome RNA metabolic process peroxisomal membrane nuclear_cap_binding_complex peroxisome organization RNA_cap_binding ATPase_activity,_coupled transmembrane transport metal ion transmembrane transporter activity integral to membrane Peroxisome | details |
| TreatCFM000996 | Transcription_related, Transcription factor: C2H2 RNA degradation | details |
| TreatCFM001216 | tRNA processing Ubiquitin_Proteasome_system, E3 adaptor: DWD acyl-CoA hydrolysis ω-hydroxylation of caprate and laurate detoxification of reactive carbonyls in chloroplasts RNA transport Bile secretion | details |
| TreatCFM001220 | Jak-STAT signaling pathway | details |
| TreatCFM001265 | zinc ion binding Transcription_related, Transcription factor: faR1 Transcription_related, Transcription factor: B3 UTP and CTP dephosphorylation II pyrimidine deoxyribonucleotides de novo biosynthesis I | details |
| TreatCFM001373 | mRNA guanylyltransferase activity ubiquitin-specific_protease_activity 7-methylguanosine mRNA capping protein tyrosine/serine/threonine phosphatase activity protein_deubiquitination mRNA processing protein dephosphorylation Ubiquitin_Proteasome_system, DUB: OTU Transcription_related, Transcription factor: C2H2 mRNA surveillance pathway | details |
| TreatCFM001488 | protein_targeting_to_peroxisome peroxisome organization ATPase_activity,_coupled peroxisomal membrane Peroxisome | details |
| TreatCFM001566 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2H2 xylogalacturonan biosynthesis | details |
| TreatCFM001567 | lysine biosynthetic process via diaminopimelate phosphate-containing compound metabolic process diaminopimelate epimerase activity inorganic diphosphatase activity double-stranded DNA binding mitochondrion cytoplasm Transcription_related, Transcription factor: mTERF formation of glycosidic bonds, GlycosylTransferases: GTnc lysine biosynthesis VI Lysine biosynthesis Oxidative phosphorylation | details |
| TreatCFM001614 | tRNA processing metal ion binding acyl-CoA hydrolysis ω-hydroxylation of caprate and laurate RNA transport Bile secretion | details |
| TreatCFM001631 | peroxisome organization integral_component_of_peroxisomal_membrane | details |
Expression profiles
 Show details about module gene expression profiling |