LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE002205

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE002205

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE002205AT1G03630.2protochlorophyllide oxidoreductase C1positive
GWHGAAZE003496AT5G62140.1ATP-dependent Clp protease ATP-binding subunit;(source:Araport11)0.95positive
GWHGAAZE026928AT3G21870.1cyclin p2;10.95positive
GWHGAAZE025507AT1G72030.1Acyl-CoA N-acyltransferases (NAT) superfamily protein0.94positive
GWHGAAZE022922AT1G60550.1enoyl-CoA hydratase/isomerase D0.94positive
GWHGAAZE024395AT4G10340.1light harvesting complex of photosystem II 50.93positive
GWHGAAZE002204AT1G03630.1protochlorophyllide oxidoreductase C0.93positive
GWHGAAZE022915AT1G23740.1Oxidoreductase, zinc-binding dehydrogenase family protein0.93positive
GWHGAAZE013381AT1G68590.1Ribosomal protein PSRP-3/Ycf650.93positive
GWHGAAZE021826AT1G60000.1RNA-binding (RRM/RBD/RNP motifs) family protein0.93positive
GWHGAAZE032490AT2G42280.1basic helix-loop-helix (bHLH) DNA-binding superfamily protein0.92positive
GWHGAAZE015257AT5G57030.1Lycopene beta/epsilon cyclase protein0.92positive
GWHGAAZE014291AT4G09040.2RNA-binding (RRM/RBD/RNP motifs) family protein0.92positive
GWHGAAZE018281AT2G47450.1chloroplast signal recognition particle component (CAO)0.92positive
GWHGAAZE004540----0.92positive
GWHGAAZE025971AT2G29760.1Tetratricopeptide repeat (TPR)-like superfamily protein0.92positive
GWHGAAZE018145AT1G18170.1FKBP-like peptidyl-prolyl cis-trans isomerase family protein0.91positive
GWHGAAZE012647AT5G17170.2rubredoxin family protein0.91positive
GWHGAAZE031520AT3G61870.1plant/protein;(source:Araport11)0.91positive
GWHGAAZE012937AT5G01920.1Protein kinase superfamily protein0.91positive
GWHGAAZE005464AT3G54050.2high cyclic electron flow 10.91positive
GWHGAAZE026414AT3G47430.1peroxin 11B0.91positive
GWHGAAZE021946AT5G43860.1chlorophyllase 20.91positive
GWHGAAZE016090AT4G03520.1Thioredoxin superfamily protein0.91positive
GWHGAAZE027213AT5G54540.1Uncharacterised conserved protein (UCP012943)0.91positive
GWHGAAZE017799AT1G18730.3NDH dependent flow 60.91positive
GWHGAAZE005661AT2G36990.1RNApolymerase sigma-subunit F0.91positive
GWHGAAZE031965AT1G54780.1thylakoid lumen 18.3 kDa protein0.91positive
GWHGAAZE009616AT2G20180.3phytochrome interacting factor 3-like 50.91positive
GWHGAAZE022580AT2G01320.3ABC-2 type transporter family protein0.91positive
GWHGAAZE029003AT3G18830.1polyol/monosaccharide transporter 50.91positive
GWHGAAZE025150AT1G08540.1RNApolymerase sigma subunit 20.9positive
GWHGAAZE016712AT1G76570.1Chlorophyll A-B binding family protein0.9positive
GWHGAAZE003591AT5G52780.1Protein of unknown function (DUF3464)0.9positive
GWHGAAZE024059AT1G44575.1Chlorophyll A-B binding family protein0.9positive
GWHGAAZE017111AT3G26060.1Thioredoxin superfamily protein0.9positive
GWHGAAZE027917AT1G32060.1phosphoribulokinase0.9positive
GWHGAAZE026809AT3G18000.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.9positive
GWHGAAZE005023AT3G12780.1phosphoglycerate kinase 10.9positive
GWHGAAZE018111AT1G15060.1Uncharacterised conserved protein UCP031088, alpha/beta hydrolase0.9positive
GWHGAAZE018235AT3G08010.1RNA binding0.9positive
GWHGAAZE013506AT1G14150.1PsbQ-like 20.9positive
GWHGAAZE018487AT1G79080.1Pentatricopeptide repeat (PPR) superfamily protein0.9positive
GWHGAAZE001581AT4G25650.1ACD1-like0.9positive
GWHGAAZE012646AT5G17170.1rubredoxin family protein0.9positive
GWHGAAZE004803AT5G54770.1thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)0.9positive
GWHGAAZE018658AT2G22780.1peroxisomal NAD-malate dehydrogenase 10.9positive
GWHGAAZE016954AT2G21960.1transmembrane protein;(source:Araport11)0.9positive
GWHGAAZE002216AT5G54190.1protochlorophyllide oxidoreductase A0.9positive
GWHGAAZE029057AT3G18830.1polyol/monosaccharide transporter 50.9positive
GWHGAAZE024151AT3G15360.1thioredoxin M-type 40.89positive
GWHGAAZE008595AT5G67150.1HXXXD-type acyl-transferase family protein0.89positive
GWHGAAZE012323AT5G30510.1ribosomal protein S10.89positive
GWHGAAZE006992AT1G55370.2NDH-dependent cyclic electron flow 50.89positive
GWHGAAZE007223AT1G08550.2non-photochemical quenching 10.89positive
GWHGAAZE013715AT3G61470.1photosystem I light harvesting complex gene 20.89positive
GWHGAAZE019589AT5G27560.1Domain of unknown function (DUF1995)0.89positive
GWHGAAZE032106AT2G47910.1chlororespiratory reduction 60.89positive
GWHGAAZE018314AT1G68010.1hydroxypyruvate reductase0.89positive
GWHGAAZE007528AT1G20020.1ferredoxin-NADP(+)-oxidoreductase 20.89positive
GWHGAAZE006914AT5G45680.1FK506-binding protein 130.89positive
GWHGAAZE023194AT3G50820.1photosystem II subunit O-20.89positive
GWHGAAZE026047AT4G32260.1ATPase, F0 complex, subunit B/B', bacterial/chloroplast0.89positive
GWHGAAZE017096AT1G19150.1photosystem I light harvesting complex gene 60.89positive
GWHGAAZE033545AT4G25910.1NFU domain protein 30.89positive
GWHGAAZE001677AT1G48120.1hydrolases;protein serine/threonine phosphatases0.89positive
GWHGAAZE002537AT3G14420.2Aldolase-type TIM barrel family protein0.89positive
GWHGAAZE027923AT1G31920.1Tetratricopeptide repeat (TPR)-like superfamily protein0.89positive
GWHGAAZE017615AT5G51010.1Rubredoxin-like superfamily protein0.89positive
GWHGAAZE027847AT5G46800.1Mitochondrial substrate carrier family protein0.89positive
GWHGAAZE022150AT4G02510.1translocon at the outer envelope membrane of chloroplasts 1590.89positive
GWHGAAZE006512AT4G04640.1ATPase, F1 complex, gamma subunit protein0.89positive
GWHGAAZE012712AT4G27800.1thylakoid-associated phosphatase 380.89positive
GWHGAAZE014801AT5G38430.1Ribulose bisphosphate carboxylase (small chain) family protein0.89positive
GWHGAAZE021532AT4G13670.1plastid transcriptionally active 50.89positive
GWHGAAZE007423AT3G50685.1anti-muellerian hormone type-2 receptor;(source:Araport11)0.88positive
GWHGAAZE026288AT5G52420.1transmembrane protein;(source:Araport11)0.88positive
GWHGAAZE024843AT4G01150.1Integral thylakoid membrane protein required for proper grana stack curvature.0.88positive
GWHGAAZE027823AT2G35370.1glycine decarboxylase complex H0.88positive
GWHGAAZE001297AT4G31530.1NAD(P)-binding Rossmann-fold superfamily protein0.88positive
GWHGAAZE027203AT4G03280.1photosynthetic electron transfer C0.88positive
GWHGAAZE026333AT5G52030.2TraB family protein0.88positive
GWHGAAZE021711AT1G03130.1photosystem I subunit D-20.88positive
GWHGAAZE025225AT3G63490.1Ribosomal protein L1p/L10e family0.88positive
GWHGAAZE024020AT4G36020.1cold shock domain protein 10.88positive
GWHGAAZE025369AT3G01660.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.88positive
GWHGAAZE008977AT2G27680.1NAD(P)-linked oxidoreductase superfamily protein0.88positive
GWHGAAZE021943AT5G43860.1chlorophyllase 20.88positive
GWHGAAZE023697AT5G21430.2Chaperone DnaJ-domain superfamily protein0.88positive
GWHGAAZE000685AT4G13510.1ammonium transporter 1;10.88positive
GWHGAAZE006959AT5G45040.1Cytochrome c0.88positive
GWHGAAZE017461AT1G52770.1Phototropic-responsive NPH3 family protein0.88positive
GWHGAAZE026554AT3G56010.1transmembrane protein;(source:Araport11)0.88positive
GWHGAAZE008252AT1G51110.1Plastid-lipid associated protein PAP / fibrillin family protein0.88positive
GWHGAAZE027057AT3G14420.2Aldolase-type TIM barrel family protein0.88positive
GWHGAAZE029881AT5G64380.1Inositol monophosphatase family protein0.88positive
GWHGAAZE006205AT1G62750.1Translation elongation factor EFG/EF2 protein0.88positive
GWHGAAZE027456AT4G24090.1homer protein;(source:Araport11)0.88positive
GWHGAAZE023162AT5G15900.1TRICHOME BIREFRINGENCE-LIKE 190.88positive
GWHGAAZE014940AT1G20020.1ferredoxin-NADP(+)-oxidoreductase 20.88positive
GWHGAAZE017614AT3G23760.1transferring glycosyl group transferase;(source:Araport11)0.88positive
GWHGAAZE030605AT1G74730.1Protein of unknown function (DUF1118)0.87positive
GWHGAAZE031355AT2G45740.3peroxin 11D0.87positive
GWHGAAZE033925AT1G09340.1chloroplast RNA binding0.87positive
GWHGAAZE018238AT4G35440.2chloride channel E0.87positive
GWHGAAZE006573AT4G21445.1CRR9 gene encodes a novel stromal protein without any known functional domains or motifs. It is highly conserved in cyanobacteria and land plants but not in green algae.0.87positive
GWHGAAZE030101AT2G21330.1fructose-bisphosphate aldolase 10.87positive
GWHGAAZE021757AT4G14890.12Fe-2S ferredoxin-like superfamily protein0.87positive
GWHGAAZE022068AT5G35630.3glutamine synthetase 20.87positive
GWHGAAZE011954AT1G14870.1PLANT CADMIUM RESISTANCE 20.87positive
GWHGAAZE004350AT5G44520.1NagB/RpiA/CoA transferase-like superfamily protein0.87positive
GWHGAAZE005414AT5G58770.1Undecaprenyl pyrophosphate synthetase family protein0.87positive
GWHGAAZE001939AT1G06680.1photosystem II subunit P-10.87positive
GWHGAAZE017586AT1G16080.1nuclear protein;(source:Araport11)0.87positive
GWHGAAZE017569AT1G15980.1NDH-dependent cyclic electron flow 10.87positive
GWHGAAZE018446AT2G21710.1Mitochondrial transcription termination factor family protein0.87positive
GWHGAAZE001596AT4G25650.1ACD1-like0.87positive
GWHGAAZE016972AT4G39710.1FK506-binding protein 16-20.87positive
GWHGAAZE030963AT3G16250.1NDH-dependent cyclic electron flow 10.87positive
GWHGAAZE024391AT5G38520.1alpha/beta-Hydrolases superfamily protein0.87positive
GWHGAAZE025191AT3G63540.1Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein0.87positive
GWHGAAZE004232AT1G64770.1NDH-dependent cyclic electron flow 10.87positive
GWHGAAZE016686AT1G42970.1glyceraldehyde-3-phosphate dehydrogenase B subunit0.87positive
GWHGAAZE009790AT3G63140.1chloroplast stem-loop binding protein of 41 kDa0.87positive
GWHGAAZE024196AT1G43670.1Inositol monophosphatase family protein0.87positive
GWHGAAZE012389AT1G12900.1glyceraldehyde 3-phosphate dehydrogenase A subunit 20.86positive
GWHGAAZE010658AT2G13360.2alanine:glyoxylate aminotransferase0.86positive
GWHGAAZE003809AT2G36000.1Mitochondrial transcription termination factor family protein0.86positive
GWHGAAZE000219AT2G48070.2resistance to phytophthora 10.86positive
GWHGAAZE025249AT2G39970.1Mitochondrial substrate carrier family protein0.86positive
GWHGAAZE005809AT2G36145.1hypothetical protein;(source:Araport11)0.86positive
GWHGAAZE003802AT1G65780.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.86positive
GWHGAAZE004673AT5G22620.2phosphoglycerate/bisphosphoglycerate mutase family protein0.86positive
GWHGAAZE027019AT4G13500.1transmembrane protein;(source:Araport11)0.86positive
GWHGAAZE014917AT4G38970.1fructose-bisphosphate aldolase 20.86positive
GWHGAAZE016646AT1G20340.1Cupredoxin superfamily protein0.86positive
GWHGAAZE030414AT1G74070.1Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein0.86positive
GWHGAAZE002750AT4G03280.1photosynthetic electron transfer C0.86positive
GWHGAAZE022953AT1G70580.4alanine-2-oxoglutarate aminotransferase 20.86positive
GWHGAAZE004847AT1G11860.3Glycine cleavage T-protein family0.86positive
GWHGAAZE005985AT2G46270.1G-box binding factor 30.86positive
GWHGAAZE025475AT3G26710.1cofactor assembly of complex C0.86positive
GWHGAAZE030895AT3G15840.1post-illumination chlorophyll fluorescence increase0.86positive
GWHGAAZE032381AT1G44575.1Chlorophyll A-B binding family protein0.86positive
GWHGAAZE010819AT3G23700.1Nucleic acid-binding proteins superfamily0.86positive
GWHGAAZE026107AT5G59200.1Tetratricopeptide repeat (TPR)-like superfamily protein0.86positive
GWHGAAZE024171AT1G21350.3Thioredoxin superfamily protein0.86positive
GWHGAAZE013716AT3G61470.1photosystem I light harvesting complex gene 20.86positive
GWHGAAZE016978AT4G39710.1FK506-binding protein 16-20.86positive
GWHGAAZE027432AT5G36700.42-phosphoglycolate phosphatase 10.86positive
GWHGAAZE000523AT4G12800.1photosystem I subunit l0.86positive
GWHGAAZE024680AT1G54500.1Rubredoxin-like superfamily protein0.86positive
GWHGAAZE005475AT2G26975.1Ctr copper transporter family0.86positive
GWHGAAZE025246AT3G04790.1Ribose 5-phosphate isomerase, type A protein0.86positive


Expression profiling, GSEA and motif analysis