LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE010940

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE010940

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE010940AT1G10830.115-cis-zeta-carotene isomerase1positive
GWHGAAZE010985AT1G10830.115-cis-zeta-carotene isomerase0.99positive
GWHGAAZE010986AT1G10830.215-cis-zeta-carotene isomerase0.98positive
GWHGAAZE020925AT1G05680.1Uridine diphosphate glycosyltransferase 74E20.97positive
GWHGAAZE030764AT5G50700.1hydroxysteroid dehydrogenase 10.96positive
GWHGAAZE015248AT4G29840.1Pyridoxal-5'-phosphate-dependent enzyme family protein0.96positive
GWHGAAZE030090AT5G17540.1HXXXD-type acyl-transferase family protein0.96positive
GWHGAAZE007756AT5G37550.1hypothetical protein;(source:Araport11)0.95positive
GWHGAAZE008933AT2G36090.1F-box family protein0.95positive
GWHGAAZE009607AT2G33150.1peroxisomal 3-ketoacyl-CoA thiolase 30.95positive
GWHGAAZE032774AT4G39330.1cinnamyl alcohol dehydrogenase 90.95positive
GWHGAAZE015066AT1G76490.1hydroxy methylglutaryl CoA reductase 10.95positive
GWHGAAZE004808AT4G05000.2Vacuolar protein sorting-associated protein VPS28 family protein0.94positive
GWHGAAZE002743AT5G41550.1Disease resistance protein (TIR-NBS-LRR class) family0.94positive
GWHGAAZE006238AT4G16563.1Eukaryotic aspartyl protease family protein0.94positive
GWHGAAZE032292AT1G64940.1cytochrome P450, family 87, subfamily A, polypeptide 60.94positive
GWHGAAZE032950AT5G26030.2ferrochelatase 10.94positive
GWHGAAZE014322AT1G34780.1APR-like 40.94positive
GWHGAAZE003978AT5G06570.2alpha/beta-Hydrolases superfamily protein0.94positive
GWHGAAZE014864AT5G66450.2Phosphatidic acid phosphatase (PAP2) family protein0.93positive
GWHGAAZE007720AT1G65890.1acyl activating enzyme 120.93positive
GWHGAAZE020659AT5G04940.2SU(VAR)3-9 homolog 10.93positive
GWHGAAZE024940AT1G12600.1UDP-N-acetylglucosamine (UAA) transporter family0.93positive
GWHGAAZE020611AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.93positive
GWHGAAZE030766AT5G50700.1hydroxysteroid dehydrogenase 10.93positive
GWHGAAZE027621AT1G12640.1MBOAT (membrane bound O-acyl transferase) family protein0.93positive
GWHGAAZE023416AT4G37260.1myb domain protein 730.93positive
GWHGAAZE020602AT5G35917.1cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene0.93positive
GWHGAAZE031972AT3G05200.1RING/U-box superfamily protein0.93positive
GWHGAAZE030759AT3G02230.1reversibly glycosylated polypeptide 10.93positive
GWHGAAZE002744AT5G54250.2cyclic nucleotide-gated cation channel 40.93positive
GWHGAAZE033794AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.93positive
GWHGAAZE009352AT2G30040.1mitogen-activated protein kinase kinase kinase 140.93positive
GWHGAAZE015914AT5G54160.1O-methyltransferase 10.93positive
GWHGAAZE022349AT3G19970.1alpha/beta-Hydrolases superfamily protein0.92positive
GWHGAAZE005955AT5G53110.1RING/U-box superfamily protein0.92positive
GWHGAAZE009597AT3G07090.1PPPDE putative thiol peptidase family protein0.92positive
GWHGAAZE032753AT4G15560.1Deoxyxylulose-5-phosphate synthase0.92positive
GWHGAAZE023138AT3G51550.1Malectin/receptor-like protein kinase family protein0.92positive
GWHGAAZE002831AT4G27030.1fatty acid desaturase A0.92positive
GWHGAAZE015247AT5G35460.1membrane protein;(source:Araport11)0.92positive
GWHGAAZE024117AT1G77280.1Protein kinase protein with adenine nucleotide alpha hydrolases-like domain0.92positive
GWHGAAZE007315AT4G37870.1phosphoenolpyruvate carboxykinase 10.92positive
GWHGAAZE032243AT4G15560.1Deoxyxylulose-5-phosphate synthase0.92positive
GWHGAAZE020599AT2G22330.1cytochrome P450, family 79, subfamily B, polypeptide 30.91positive
GWHGAAZE003636AT1G35910.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein0.91positive
GWHGAAZE023964AT1G36940.1myotubularin-like protein;(source:Araport11)0.91positive
GWHGAAZE012101AT4G14410.1basic helix-loop-helix (bHLH) DNA-binding superfamily protein0.91positive
GWHGAAZE011073AT4G13640.1Homeodomain-like superfamily protein0.91positive
GWHGAAZE013027AT2G38110.1glycerol-3-phosphate acyltransferase 60.91positive
GWHGAAZE003257----0.91positive
GWHGAAZE030179AT4G38690.1PLC-like phosphodiesterases superfamily protein0.91positive
GWHGAAZE014135AT3G16150.1N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein0.91positive
GWHGAAZE023132AT5G15240.1Transmembrane amino acid transporter family protein0.91positive
GWHGAAZE009574AT3G25110.1fatA acyl-ACP thioesterase0.91positive
GWHGAAZE033207AT5G14970.1seed maturation-like protein;(source:Araport11)0.91positive
GWHGAAZE028421AT5G11730.1Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein0.91positive
GWHGAAZE012671----0.91positive
GWHGAAZE032015AT4G15560.1Deoxyxylulose-5-phosphate synthase0.91positive
GWHGAAZE019222----0.91positive
GWHGAAZE023133AT3G28960.1Transmembrane amino acid transporter family protein0.91positive
GWHGAAZE023847----0.9positive
GWHGAAZE020600AT5G05260.1cytochrome p450 79a20.9positive
GWHGAAZE000653AT2G30040.1mitogen-activated protein kinase kinase kinase 140.9positive
GWHGAAZE008998AT1G08250.1arogenate dehydratase 60.9positive
GWHGAAZE011697AT1G08970.4nuclear factor Y, subunit C90.9positive
GWHGAAZE023777AT5G12010.1nuclease;(source:Araport11)0.9positive
GWHGAAZE023781AT2G22590.1UDP-Glycosyltransferase superfamily protein0.9positive
GWHGAAZE033143AT3G28960.1Transmembrane amino acid transporter family protein0.9positive
GWHGAAZE026119AT4G31780.2monogalactosyl diacylglycerol synthase 10.9positive
GWHGAAZE023130AT3G28960.1Transmembrane amino acid transporter family protein0.9positive
GWHGAAZE018278AT1G29420.1SAUR-like auxin-responsive protein family 0.9positive
GWHGAAZE020924AT2G43820.1UDP-glucosyltransferase 74F20.9positive
GWHGAAZE004154AT5G03990.1FK506-binding-like protein;(source:Araport11)0.9positive
GWHGAAZE033124AT3G47500.1cycling DOF factor 30.9positive
GWHGAAZE019600AT3G05290.1peroxisomal adenine nucleotide carrier 10.9positive
GWHGAAZE014370AT5G39660.2cycling DOF factor 20.9positive
GWHGAAZE000980AT1G52340.1NAD(P)-binding Rossmann-fold superfamily protein0.9positive
GWHGAAZE027631AT4G11820.2hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase0.9positive
GWHGAAZE010941AT1G10830.115-cis-zeta-carotene isomerase0.9positive
GWHGAAZE004197AT2G15490.3UDP-glycosyltransferase 73B40.9positive
GWHGAAZE015166AT4G39330.1cinnamyl alcohol dehydrogenase 90.9positive
GWHGAAZE023782AT2G22590.1UDP-Glycosyltransferase superfamily protein0.89positive
GWHGAAZE023779AT5G65550.1UDP-Glycosyltransferase superfamily protein0.89positive
GWHGAAZE001672AT5G16440.1isopentenyl diphosphate isomerase 10.89positive
GWHGAAZE007089AT2G41900.1CCCH-type zinc finger protein with ARM repeat domain0.89positive
GWHGAAZE033202----0.89positive
GWHGAAZE020238AT3G13050.1Major facilitator superfamily protein0.89positive
GWHGAAZE023143AT3G51550.1Malectin/receptor-like protein kinase family protein0.89positive
GWHGAAZE031241AT2G44810.1alpha/beta-Hydrolases superfamily protein0.89positive
GWHGAAZE032775AT4G37980.1elicitor-activated gene 3-10.89positive
GWHGAAZE021989AT3G23000.1CBL-interacting protein kinase 70.89positive
GWHGAAZE004715AT5G54390.1HAL2-like0.88positive
GWHGAAZE010955AT5G39530.1Protein of unknown function (DUF1997)0.88positive
GWHGAAZE028415AT5G26030.2ferrochelatase 10.88positive
GWHGAAZE031137AT1G53840.1pectin methylesterase 10.88positive
GWHGAAZE027163AT1G53050.1Protein kinase superfamily protein0.88positive
GWHGAAZE024394AT1G33290.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.88positive
GWHGAAZE017612AT5G51040.1Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.Sdhaf2 knockdown line showed lowered SDH1 protein abundance, lowered maximal SDH activity and less protein-bound FAD at the molecular mass of SDH1.0.88positive
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)0.88positive
GWHGAAZE008133AT1G60690.1NAD(P)-linked oxidoreductase superfamily protein0.88positive
GWHGAAZE009694AT5G24530.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.88positive
GWHGAAZE014540AT2G23450.2Protein kinase superfamily protein0.88positive
GWHGAAZE002562AT1G30040.1gibberellin 2-oxidase0.88positive
GWHGAAZE000979AT1G52340.1NAD(P)-binding Rossmann-fold superfamily protein0.88positive
GWHGAAZE020654AT1G73100.1SU(VAR)3-9 homolog 30.88positive
GWHGAAZE003054AT1G79160.1filamentous hemagglutinin transporter;(source:Araport11)0.88positive
GWHGAAZE011074AT3G24120.2Homeodomain-like superfamily protein0.87positive
GWHGAAZE027620AT1G12710.1phloem protein 2-A120.87positive
GWHGAAZE021159AT4G15550.1indole-3-acetate beta-D-glucosyltransferase0.87positive
GWHGAAZE031914AT3G59030.1MATE efflux family protein0.87positive
GWHGAAZE018110AT1G73760.1RING/U-box superfamily protein0.87positive
GWHGAAZE025068AT1G02090.1Proteasome component (PCI) domain protein0.87positive
GWHGAAZE020601AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.87positive
GWHGAAZE027634AT1G62990.1KNOTTED-like homeobox of Arabidopsis thaliana 70.87positive
GWHGAAZE030075AT2G16400.1BEL1-like homeodomain 70.87positive
GWHGAAZE010942AT1G10830.215-cis-zeta-carotene isomerase0.87positive
GWHGAAZE026200AT5G24800.1basic leucine zipper 90.87positive
GWHGAAZE023896AT1G71960.1ATP-binding casette family G250.87positive
GWHGAAZE004253AT3G54780.1Zinc finger (C3HC4-type RING finger) family protein0.87positive
GWHGAAZE011850AT5G19260.1Protein of unknown function (DUF3049)0.87positive
GWHGAAZE002956AT1G55840.1Sec14p-like phosphatidylinositol transfer family protein0.87positive
GWHGAAZE015961AT5G17540.1HXXXD-type acyl-transferase family protein0.87positive
GWHGAAZE006117AT1G12630.1Integrase-type DNA-binding superfamily protein0.87positive
GWHGAAZE015555AT5G20050.1Protein kinase superfamily protein0.87positive
GWHGAAZE012652AT4G10430.3TMPIT-like protein0.87positive
GWHGAAZE004198AT1G22370.2UDP-glucosyl transferase 85A50.87positive
GWHGAAZE013159AT2G37250.1adenosine kinase0.87positive
GWHGAAZE023895AT1G71960.1ATP-binding casette family G250.87positive
GWHGAAZE026088AT5G25110.1CBL-interacting protein kinase 250.86positive
GWHGAAZE033919AT1G56700.2Peptidase C15, pyroglutamyl peptidase I-like0.86positive
GWHGAAZE028407AT2G26040.1PYR1-like 20.86positive
GWHGAAZE000173AT1G03840.1C2H2 and C2HC zinc fingers superfamily protein0.86positive
GWHGAAZE019597AT1G54940.1plant glycogenin-like starch initiation protein 40.86positive
GWHGAAZE004807AT5G28237.1Pyridoxal-5'-phosphate-dependent enzyme family protein0.86positive
GWHGAAZE001078AT2G27690.1cytochrome P450, family 94, subfamily C, polypeptide 10.86positive
GWHGAAZE014580AT4G37030.1membrane protein;(source:Araport11)0.86positive
GWHGAAZE014218AT1G09960.1sucrose transporter 40.86positive
GWHGAAZE029245AT3G05545.1RING/U-box superfamily protein0.86positive
GWHGAAZE005859AT2G36090.1F-box family protein0.86positive
GWHGAAZE005036AT2G37040.1PHE ammonia lyase 10.86positive
GWHGAAZE025303AT3G27880.1Protein of unknown function (DUF1645)0.86positive
GWHGAAZE015566AT4G09510.1cytosolic invertase 20.86positive
GWHGAAZE011717AT4G14550.1indole-3-acetic acid inducible 140.86positive
GWHGAAZE014567AT3G50530.1CDPK-related kinase0.86positive
GWHGAAZE009693AT5G24530.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.86positive
GWHGAAZE011901AT1G08970.4nuclear factor Y, subunit C90.86positive


Expression profiling, GSEA and motif analysis