LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE024387

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE024387

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE024387AT3G54280.1DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases1positive
GWHGAAZE028597AT2G25730.2zinc finger FYVE domain protein;(source:Araport11)0.92positive
GWHGAAZE028435AT5G11700.2ephrin type-B receptor;(source:Araport11)0.92positive
GWHGAAZE017287AT3G13990.1Kinase-related protein of unknown function (DUF1296)0.91positive
GWHGAAZE002951AT1G55860.1ubiquitin-protein ligase 10.91positive
GWHGAAZE005031AT1G79190.1ARM repeat superfamily protein0.91positive
GWHGAAZE032723AT3G05380.5DIRP ;Myb-like DNA-binding domain0.9positive
GWHGAAZE017272AT1G72560.3ARM repeat superfamily protein0.9positive
GWHGAAZE027349AT3G13225.2WW domain-containing protein0.9positive
GWHGAAZE005225AT1G08600.4P-loop containing nucleoside triphosphate hydrolases superfamily protein0.9positive
GWHGAAZE000449AT3G24870.1Helicase/SANT-associated, DNA binding protein0.89positive
GWHGAAZE003902AT2G26780.1ARM repeat superfamily protein0.89positive
GWHGAAZE000218AT2G48060.1piezo-type mechanosensitive ion channel component;(source:Araport11)0.89positive
GWHGAAZE004983AT1G79350.1RING/FYVE/PHD zinc finger superfamily protein0.89positive
GWHGAAZE013568AT1G59820.1aminophospholipid ATPase 30.89positive
GWHGAAZE004405AT1G27595.1Encodes a protein of unknown function containing a Symplekin C domain that is involved in negative regulation of glucose response. Mutants show increased sensitivity to glucose with a variety of assays.0.89positive
GWHGAAZE002301AT4G15180.1SET domain protein 20.89positive
GWHGAAZE000242AT1G05380.2Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein0.89positive
GWHGAAZE022722AT1G69070.1nucleolar-like protein;(source:Araport11)0.89positive
GWHGAAZE012635AT5G17020.2exportin 1A0.89positive
GWHGAAZE008570AT5G22010.1replication factor C10.89positive
GWHGAAZE031909AT1G54490.1exoribonuclease 40.88positive
GWHGAAZE009840AT2G47980.1sister-chromatid cohesion protein 30.88positive
GWHGAAZE018641AT1G50030.1target of rapamycin0.88positive
GWHGAAZE027738AT4G17330.1G2484-1 protein0.88positive
GWHGAAZE009107AT1G07990.1SIT4 phosphatase-associated family protein0.88positive
GWHGAAZE033083AT5G15540.2PHD finger family protein0.88positive
GWHGAAZE026746AT2G39260.1binding;RNA binding0.88positive
GWHGAAZE013121AT2G37520.1Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain0.88positive
GWHGAAZE028436AT4G32820.1Tetratricopeptide repeat (TPR)-like superfamily protein0.88positive
GWHGAAZE004373AT2G34780.1maternal effect embryo arrest 220.88positive
GWHGAAZE031612----0.88positive
GWHGAAZE019066AT1G33410.2SUPPRESSOR OF AUXIN RESISTANCE10.88positive
GWHGAAZE012815AT3G12810.1SNF2 domain-containing protein / helicase domain-containing protein0.88positive
GWHGAAZE003866AT5G06600.1ubiquitin-specific protease 120.88positive
GWHGAAZE012285AT5G49430.1WD40/YVTN repeat-like-containing domain;Bromodomain0.88positive
GWHGAAZE013300AT2G36490.1demeter-like 10.88positive
GWHGAAZE030977AT5G48120.1ARM repeat superfamily protein0.87positive
GWHGAAZE011929AT1G55860.2ubiquitin-protein ligase 10.87positive
GWHGAAZE033273AT3G27670.1ARM repeat superfamily protein0.87positive
GWHGAAZE024694AT5G27970.1ARM repeat superfamily protein0.87positive
GWHGAAZE025261AT5G13480.2Transducin/WD40 repeat-like superfamily protein0.87positive
GWHGAAZE031825AT3G54460.1SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein0.87positive
GWHGAAZE019461AT1G59760.1RNA helicase, ATP-dependent, SK12/DOB1 protein0.87positive
GWHGAAZE008355AT1G55250.3histone mono-ubiquitination 20.87positive
GWHGAAZE026111AT5G25060.1RNA recognition motif (RRM)-containing protein0.87positive
GWHGAAZE005718AT3G53090.2ubiquitin-protein ligase 70.87positive
GWHGAAZE022410AT3G19780.1hypothetical protein;(source:Araport11)0.87positive
GWHGAAZE031558AT1G01040.1dicer-like 10.87positive
GWHGAAZE016771AT5G24740.1Protein of unknown function (DUF1162)0.87positive
GWHGAAZE030710AT3G48470.1embryo defective 24230.87positive
GWHGAAZE009588AT3G24870.1Helicase/SANT-associated, DNA binding protein0.87positive
GWHGAAZE017194AT1G16800.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.87positive
GWHGAAZE002638AT3G14980.1Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein0.86positive
GWHGAAZE003776----0.86positive
GWHGAAZE015049AT2G17510.1ribonuclease II family protein0.86positive
GWHGAAZE017706AT5G63320.1nuclear protein X10.86positive
GWHGAAZE026085AT2G25170.1chromatin remodeling factor CHD3 (PICKLE)0.86positive
GWHGAAZE033596AT5G58100.1transmembrane protein;(source:Araport11)0.86positive
GWHGAAZE013009AT5G01400.1HEAT repeat-containing protein0.86positive
GWHGAAZE033085AT4G00830.2RNA-binding (RRM/RBD/RNP motifs) family protein0.86positive
GWHGAAZE022958AT1G70620.3cyclin-related0.86positive
GWHGAAZE011743AT1G04210.1Leucine-rich repeat protein kinase family protein0.86positive
GWHGAAZE005951AT5G53440.1LOW protein: zinc finger CCCH domain protein;(source:Araport11)0.86positive
GWHGAAZE030407AT1G73960.2TBP-associated factor 20.86positive
GWHGAAZE014945AT5G66180.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.86positive
GWHGAAZE008455AT1G55350.4calpain-type cysteine protease family0.86positive
GWHGAAZE005835----0.86positive
GWHGAAZE022077AT3G06290.1SAC3/GANP/Nin1/mts3/eIF-3 p25 family0.86positive
GWHGAAZE009955AT2G47390.1Prolyl oligopeptidase family protein0.86positive
GWHGAAZE005435AT2G20590.1Reticulon family protein0.86positive
GWHGAAZE006440AT5G47690.1binding0.86positive
GWHGAAZE027205AT3G20630.1ubiquitin-specific protease 140.86positive
GWHGAAZE008672AT2G27170.2Structural maintenance of chromosomes (SMC) family protein0.86positive


Expression profiling, GSEA and motif analysis