LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE030552

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE030552

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE030552AT3G48050.2BAH domain ;TFIIS helical bundle-like domain1positive
GWHGAAZE014253AT3G27700.2zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein0.93positive
GWHGAAZE005888AT4G10730.1Protein kinase superfamily protein0.93positive
GWHGAAZE030190AT4G38600.1HEAT repeat ;HECT-domain (ubiquitin-transferase)0.92positive
GWHGAAZE031839AT5G13530.1protein kinases;ubiquitin-protein ligases0.92positive
GWHGAAZE024115AT1G77300.2histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific)0.92positive
GWHGAAZE024875AT2G46020.2transcription regulatory protein SNF2, putative0.91positive
GWHGAAZE004010AT5G19400.3Telomerase activating protein Est10.91positive
GWHGAAZE016870AT5G09350.1phosphatidylinositol 4-OH kinase beta20.9positive
GWHGAAZE001017AT5G22760.1PHD finger family protein0.9positive
GWHGAAZE030976AT1G79730.1hydroxyproline-rich glycoprotein family protein0.9positive
GWHGAAZE004219AT3G11960.1Cleavage and polyadenylation specificity factor (CPSF) A subunit protein0.9positive
GWHGAAZE005666AT2G36960.2TSL-kinase interacting protein 10.9positive
GWHGAAZE021705AT3G22380.1time for coffee0.9positive
GWHGAAZE005177AT3G04580.2Signal transduction histidine kinase, hybrid-type, ethylene sensor0.89positive
GWHGAAZE003964AT3G04740.1RNA polymerase II transcription mediators0.89positive
GWHGAAZE030516AT3G48195.1Phox (PX) domain-containing protein0.89positive
GWHGAAZE031917AT3G05090.2Transducin/WD40 repeat-like superfamily protein0.89positive
GWHGAAZE009596AT2G32700.6LEUNIG_homolog0.89positive
GWHGAAZE015276AT3G26560.1ATP-dependent RNA helicase, putative0.89positive
GWHGAAZE031836AT5G13530.2protein kinases;ubiquitin-protein ligases0.89positive
GWHGAAZE009191AT1G07705.2NOT2 / NOT3 / NOT5 family0.88positive
GWHGAAZE011809AT4G14920.1Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein0.88positive
GWHGAAZE030524AT5G40340.1Tudor/PWWP/MBT superfamily protein0.88positive
GWHGAAZE031840AT5G13530.2protein kinases;ubiquitin-protein ligases0.88positive
GWHGAAZE031133AT3G14270.1phosphatidylinositol-4-phosphate 5-kinase family protein0.88positive
GWHGAAZE004691AT1G11060.1WAPL (Wings apart-like protein regulation of heterochromatin) protein0.88positive
GWHGAAZE026771AT1G06410.1trehalose-phosphatase/synthase 70.88positive
GWHGAAZE007912AT2G22010.1related to KPC10.88positive
GWHGAAZE010491AT2G43500.2Plant regulator RWP-RK family protein0.88positive
GWHGAAZE013777AT1G20980.1squamosa promoter binding protein-like 140.88positive
GWHGAAZE013803AT1G20760.1Calcium-binding EF hand family protein0.88positive
GWHGAAZE016926AT4G39420.2spatacsin carboxy-terminus protein;(source:Araport11)0.88positive
GWHGAAZE009866AT3G62900.1CW-type Zinc Finger0.88positive
GWHGAAZE024887----0.87positive
GWHGAAZE018326AT4G38600.1HEAT repeat ;HECT-domain (ubiquitin-transferase)0.87positive
GWHGAAZE014346AT4G30100.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.87positive
GWHGAAZE018489AT4G34370.1RING/U-box superfamily protein0.87positive
GWHGAAZE021781AT1G04790.1RING/U-box superfamily protein0.87positive
GWHGAAZE007276AT3G03790.2ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein0.87positive
GWHGAAZE008216AT1G73730.1ETHYLENE-INSENSITIVE3-like 30.87positive
GWHGAAZE030554AT3G48050.2BAH domain ;TFIIS helical bundle-like domain0.87positive
GWHGAAZE003012AT3G13340.2Transducin/WD40 repeat-like superfamily protein0.86positive
GWHGAAZE007488AT2G16485.1nucleic acid binding;zinc ion binding;DNA binding0.86positive
GWHGAAZE025942AT4G32760.1ENTH/VHS/GAT family protein0.86positive
GWHGAAZE009134AT5G60410.3DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain0.86positive
GWHGAAZE033903AT3G62200.1Putative endonuclease or glycosyl hydrolase0.86positive
GWHGAAZE032046AT1G22870.1Protein kinase family protein with ARM repeat domain0.86positive
GWHGAAZE027810AT5G47010.1RNA helicase, putative0.86positive
GWHGAAZE004901AT4G12570.1ubiquitin protein ligase 50.86positive
GWHGAAZE009698AT2G31260.1autophagy 9 (APG9)0.86positive
GWHGAAZE017117AT3G43230.1RING/FYVE/PHD-type zinc finger family protein0.86positive
GWHGAAZE002545AT1G78420.2RING/U-box superfamily protein0.86positive
GWHGAAZE025629AT3G03940.1Protein kinase family protein0.86positive
GWHGAAZE003088AT3G52250.1Duplicated homeodomain-like superfamily protein0.86positive


Expression profiling, GSEA and motif analysis