Annotation of co-expression genes

PH01000040G1260's details annotation

1.Annotation

ICBR annotation: GHMP kinases ATP-binding protein, putative, expressed

Blast result AT3G06580 : 0.00E+00
Blast annotation: Mevalonate/galactokinase family protein

2.Location

Scaffold: PH01000040
Strand: -

RegionStartEnd
gene852865861034
mRNA852865861034
exon852865853049
exon853469853610
exon853716853793
exon853992854062
exon854374854508
exon856608856742
exon857050857235
exon857829857897
exon858598858680
exon858779858873
exon859413859459
exon860524860696
exon860749861034
CDS852939853049
CDS853469853610
CDS853716853793
CDS853992854062
CDS854374854508
CDS856608856742
CDS857050857235
CDS857829857897
CDS858598858680
CDS858779858873
CDS859413859459
CDS860524860696
CDS860749860935

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000133C2H2 Transcription_Regulator(from PlantTFDB)
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
carbohydrate phosphorylation,
coexpression networkCFinderM000319nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
coexpression networkCFinderM000475TKL-Pl-6 (from iTAK)
carbohydrate phosphorylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
galactokinase activity,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
fructose_6-phosphate_metabolic_process
galactose metabolic process,
Fructose_and_mannose_metabolism
Galactose_metabolism
ATP binding,
6-phosphofructokinase activity,
kinase activity,
coexpression networkCFinderM000606histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
coexpression networkCFinderM000824cytoplasm,
aromatic amino acid family metabolic process,
carbohydrate phosphorylation,
galactose metabolic process,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
galactokinase activity,
iron ion binding,
heme binding,
electron carrier activity,
kinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
coexpression networkCFinderM001536carbohydrate phosphorylation,
galactose metabolic process,
CAMK_CDPK (from iTAK)
Others Transcription_Regulator(from iTAK)
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
coexpression networkCFinderM001692TKL-Pl-4 (from iTAK)
carbohydrate phosphorylation,
Ribosome
translation,
galactose metabolic process,
intracellular,
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
structural constituent of ribosome,
kinase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10509.8GalKase_gal_bdg6393
PF00288.25GHMP_kinases_N158223
PF08544.12GHMP_kinases_C398471

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Galactose metabolismgalactokinase [EC:2.7.1.6]ko00052K00849
Amino sugar and nucleotide sugar metabolismgalactokinase [EC:2.7.1.6]ko00520K00849

10.Gene Ontology

GO AccessionGO Annotation
GO:0004335galactokinase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0006012galactose metabolic process
GO:0008152metabolic process
GO:0016301kinase activity
GO:0016773phosphotransferase activity, alcohol group as acceptor
GO:0046835carbohydrate phosphorylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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