Annotation of co-expression genes

PH01000092G1660's details annotation

1.Annotation

ICBR annotation: nucleobase-ascorbate transporter, putative, expressed

Blast result AT5G62890 : 0.00E+00
Blast annotation: Xanthine/uracil permease family protein

2.Location

Scaffold: PH01000092
Strand: -

RegionStartEnd
gene11456681153845
mRNA11456681153845
exon11456681147296
exon11473701147530
exon11476461147723
exon11499721150063
exon11501641150222
exon11503201150406
exon11505171150613
exon11507171150901
exon11510041151063
exon11511431151218
exon11513601151460
exon11515491151725
exon11518081151905
exon11532991153845
CDS11470781147296
CDS11473701147530
CDS11476461147723
CDS11499721150063
CDS11501641150222
CDS11503201150406
CDS11505171150613
CDS11507171150901
CDS11510041151063
CDS11511431151218
CDS11513601151460
CDS11515491151725
CDS11518081151905
CDS11532991153530

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000133C2H2 Transcription_Regulator(from PlantTFDB)
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
carbohydrate phosphorylation,
coexpression networkCFinderM000238Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
Ribosome_biogenesis_in_eukaryotes
coexpression networkCFinderM001471regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
WRKY Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001597Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
C3H Transcription_Regulator(from PlantTFDB)
membrane,
coexpression networkCFinderM001655transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
coexpression networkCFinderM001658Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
TKL-Pl-6 (from iTAK)
coexpression networkCFinderM001703Endocytosis
regulation of ARF GTPase activity,
ARF GTPase activator activity,
coexpression networkCFinderM001735TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
coexpression networkCFinderM001756Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
coexpression networkCFinderM001809Lipoic_acid_metabolism
TKL-Pl-6 (from iTAK)
chloroplast,
lipoate biosynthetic process,
lipoate synthase activity,
coexpression networkCFinderM001854HSF Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00860.19Xan_ur_permease79483

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.