PH01000238G0910's details annotation
1.Annotation
ICBR annotation: OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed
Blast result AT2G47470 : 2.00E-150
Blast annotation: thioredoxin family protein
2.Location
Scaffold: PH01000238
Strand: +
| Region | Start | End |
| gene | 704827 | 709546 |
| mRNA | 704827 | 709546 |
| exon | 704827 | 705076 |
| exon | 706173 | 706257 |
| exon | 706487 | 706584 |
| exon | 706671 | 706726 |
| exon | 707216 | 707333 |
| exon | 707440 | 707467 |
| exon | 707572 | 707663 |
| exon | 707889 | 708045 |
| exon | 708149 | 708273 |
| exon | 708385 | 708484 |
| exon | 708581 | 709546 |
| CDS | 704907 | 705076 |
| CDS | 706173 | 706257 |
| CDS | 706487 | 706584 |
| CDS | 706671 | 706726 |
| CDS | 707216 | 707333 |
| CDS | 707440 | 707467 |
| CDS | 707572 | 707663 |
| CDS | 707889 | 708045 |
| CDS | 708149 | 708273 |
| CDS | 708385 | 708484 |
| CDS | 708581 | 708649 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM001014 | SET Transcription_Regulator(from iTAK) endoplasmic reticulum, nucleus, ubiquitin ligase complex, histone_methylation |
| coexpression network | CFinderM001187 | glycogen biosynthetic process, 'de novo' IMP biosynthetic process, 5-(carboxyamino)imidazole_ribonucleotide_mutase_activity |
| coexpression network | CFinderM001195 | nucleic acid binding, ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) C3H Transcription_Regulator(from PlantTFDB) endoplasmic reticulum, response to hormone stimulus, glycerol ether metabolic process, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001362 | Protein_processing_in_endoplasmic_reticulum mannose biosynthetic process, Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation phosphomannomutase activity, histone_lysine_methylation |
| coexpression network | CFinderM001583 | endoplasmic reticulum, bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001584 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00085.19 | Thioredoxin | 31 | 134 |
| PF00085.19 | Thioredoxin | 149 | 253 |
| PF07749.11 | ERp29 | 270 | 363 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | protein disulfide-isomerase A6 [EC:5.3.4.1] | ko04141 | K09584 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005783 | endoplasmic reticulum |
| GO:0006662 | glycerol ether metabolic process |
| GO:0009055 | electron carrier activity |
| GO:0015035 | protein disulfide oxidoreductase activity |
| GO:0016853 | isomerase activity |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.