PH01000276G1300's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type, domain containing protein, expressed
Blast result AT4G35840 : 4.60E-58
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000276
Strand: +
| Region | Start | End |
| gene | 817010 | 821669 |
| mRNA | 817010 | 821669 |
| exon | 817010 | 817762 |
| exon | 818704 | 818882 |
| exon | 820225 | 820308 |
| exon | 820431 | 820601 |
| exon | 820876 | 821669 |
| CDS | 817570 | 817762 |
| CDS | 818704 | 818882 |
| CDS | 820225 | 820308 |
| CDS | 820431 | 820601 |
| CDS | 820876 | 820998 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000188 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000611 | WNK_NRBP (from iTAK) PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001087 | peroxiredoxin activity, antioxidant activity, Glutathione_metabolism metallopeptidase activity, |
| coexpression network | CFinderM001590 | protein processing, peroxiredoxin activity, antioxidant activity, integral to membrane, Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_elongation oxidoreductase activity, acting on the CH-CH group of donors, double-stranded RNA binding, ribonuclease III activity, |
| coexpression network | CFinderM001725 | cellular protein metabolic process, MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001821 | protein processing, mRNA_surveillance_pathway protein binding, |
| coexpression network | CFinderM001822 | protein processing, PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001853 | peroxisome organization, integral_component_of_peroxisomal_membrane cullin-RING ubiquitin ligase complex, bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001857 | protein processing, antioxidant activity, peroxiredoxin activity, |
| coexpression network | CFinderM001893 | Golgi-associated vesicle, Terpenoid_backbone_biosynthesis membrane coat, COPI vesicle coat, isoprenoid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13639.5 | zf-RING_2 | 204 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.